| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1628 |
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| Symbol | fadI |
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| ID | 5611390 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1942774 |
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| End bp | 1944084 |
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| Gene Length | 1311 bp |
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| Protein Length | 436 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932498 |
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| Product | 3-ketoacyl-CoA thiolase |
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| Protein accession | YP_001473367 |
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| Protein GI | 157374767 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0183] Acetyl-CoA acetyltransferase |
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| TIGRFAM ID | [TIGR01930] acetyl-CoA acetyltransferases
[TIGR02446] fatty oxidation complex, beta subunit FadI |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00862019 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTGATA GACAACAGGT AACGAATGCT AGAGGCGATC GTATTGCCAT TGTAACGGGA
TTAAGAACCC CCTTTGCAAA ACAAGCCACG GCATTTCATG GTGTATCGGC GTTAGATATG
GGCAAGATGG TCGTTAATGA AATGCTATCT CGTTCTGAAC TGGACCCAAA ACAGATTGAA
CAATTAGTTT ATGGTCAAGT GGTGCTGATG CCCGCCGCCC CTAATATTGC TCGTGAGATT
GTACTTGGCA CCGGGATGGA TGTCGCGACT GACGCCTATA GTGTTACCCG AGCCTGTGCG
ACCAGTTTTC AATCGACGGT GAATGTTGCC GAGTCAATTA TGACGGGGAA TATTGAAATA
GGGATTGCCG GTGGTGCCGA TTCATCTTCA GTTGTCCCTA TTGGTGTTTC TAAGAAATTG
GCTCATGCCT TGATCGATCT CAATAAAGCC CGCTCATTTG GCCAAAAACT GGCTATTATC
CGCCGTTTAG GCTTAAAAGA TCTGTTACCC GTGCCTCCAG CCGTTGCCGA ATTTTCCACG
GGTCTCTCTA TGGGACAAAC AGCAGAGCAG ATGGCAAAAA CCTACAACAT CAGCCGCGCC
GACCAAGATG CGTTGGCTCA TCGCTCACAC TCGTTGGCCA CTGAGACCTG GAATGCCGGT
CACCTGACTG ATGAGGTGAT GGCGGCACAT GTTCCCCCTT ATAAAAGCTT TATCGATCGC
GATAACAATA TTCGTGAAAA CTCAACGATA GAATCTTACG CCAAATTGAG ACCCGCGTTC
GACCGCAAGC ACGGTACTGT GACTGCGGCG ACCAGTACGC CACTCACCGA TGGTGCATCG
GCAGTACTCT TGATGAGTGA AAGCCGCGCT AAGGCATTAG GTTACGATCC TATCGGTTAC
ATTAAAAGCT ACGCATTTAG TGCCATCGAT GTCTGGGAAG ATATGTTAAT GGGTCCATCT
TACGCGACGC CATTGGCACT CAAGCGCGCC GGAATGGAAC TTGAAGATCT GACGTTGATC
GAAATGCATG AAGCCTTTGC TGCCCAAACA CTGGCTAATA TGCAGATGTT TGGCTCTAAG
AAGTTTGCTG CCGAAAAGTT AGGTCGTAAT CGTGCGATTG GTGAGATAGA TATGAGCAAG
TTTAACGTTC TGGGCGGCTC ACTCGCTTAT GGACACCCAT TCGCGGCAAC AGGAACTCGA
TTAATCACCC AGGTGTGTCG TGAGCTTAAA CGCCGCGGTG GAGGTACCGG ACTCACGACG
GCCTGTGCAG CAGGCGGTTT AGGCGCAGCA ATGATAGTTG AAGTGGAGTA A
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| Protein sequence | MSDRQQVTNA RGDRIAIVTG LRTPFAKQAT AFHGVSALDM GKMVVNEMLS RSELDPKQIE
QLVYGQVVLM PAAPNIAREI VLGTGMDVAT DAYSVTRACA TSFQSTVNVA ESIMTGNIEI
GIAGGADSSS VVPIGVSKKL AHALIDLNKA RSFGQKLAII RRLGLKDLLP VPPAVAEFST
GLSMGQTAEQ MAKTYNISRA DQDALAHRSH SLATETWNAG HLTDEVMAAH VPPYKSFIDR
DNNIRENSTI ESYAKLRPAF DRKHGTVTAA TSTPLTDGAS AVLLMSESRA KALGYDPIGY
IKSYAFSAID VWEDMLMGPS YATPLALKRA GMELEDLTLI EMHEAFAAQT LANMQMFGSK
KFAAEKLGRN RAIGEIDMSK FNVLGGSLAY GHPFAATGTR LITQVCRELK RRGGGTGLTT
ACAAGGLGAA MIVEVE
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