| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1623 |
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| Symbol | |
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| ID | 5611385 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1937004 |
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| End bp | 1938938 |
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| Gene Length | 1935 bp |
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| Protein Length | 644 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932493 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001473362 |
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| Protein GI | 157374762 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG5271] AAA ATPase containing von Willebrand factor type A (vWA) domain |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000210321 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTACATT TCTTACGCCC TGAATGGTTC CTTGCCCTGC TTCCACTCGT GATAATCATG
TGGCTTTTAT GGCGAACCGA ACAGGCAAAC TCGACCTGGA ATCGATATAT CTCTCCGCAT
CTGGCGGCAT TACTGGTAAC AAAAACAAAA AATGTTAAGC GTCCCTCACT CTCGTATCTG
GCTGTTAGCT GGTTGATCGC GGTTTTTGCG CTTTCCGGAC CCGCCTTTAC TCAACAATCA
CTCCCGGTGT TTGAAGCCGC TCAGGGGCGA GTGATCGTCA TGGATATGTC ACTGTCGATG
TACGCGACGG ATCAAGCGCC TAACCGACTG TCTCAAGCTA AGTTTAAGGC GACAGACTTG
ATAGGTGAGC TAACAGAGGG GGAGACAGGA CTCGTCGCCT ATGCGGGCGA TGCCTATACC
ATCAGTCCGC TAACCCGTGA CAGGTCAACC TTGCTGAATC TCTTACCTAC CCTCTCCCCG
GATATTATGC CGTCCAGGGG CTCAAACCTC GTCGCTGCAT TAGAGCAAAG CAAAAACCTG
CTGGCTCAAG GTGGTCACAT TCGTGGGGAT ATCCTACTGC TATCAGACGG CATACCTCCA
CGGCAGCTCA ATGAAGCCAA GAAAGTCCTT AAAGGCACAC AATATCGGCT CGGGATCTTA
GCATTTGGAA GCGAGCAAGG CTCTCCTATC CGATTACCCG ATGGCCAGTT ACTTCGGGAT
AATGCTAATC AGGTGGTTGT GGCGAAAACA AACTACCTGC AGCTCAATGA ACTCGCTCAA
GAGGCCGATG GCATATTGAT CCCCTTTCGC ACCGATGGTC AAGATCTAGA GCAATTGCTT
ACCTGGCTTT CCACCACTGG CGAGACGAAA GCAACAGAAC TCGATGGTGA GGTCTGGCAA
GATGCCGGAC CATTCATCGC TTTGTTGCTG CTTATTCCCG TCCTGTTAAG TTTCAGACAT
GGGTTAGTTT GCGCCGCACT CGTCTGCATT ATCTATCAAC CAACCCCAGC CCTTGCTTCA
AGCTGGGACG ATGTATGGCA AACTAAGAAC CAACAGGGGA TGGAGGCCTA TCAGGCTCAG
GAATATCAAG GTGCGTCTGA AAAATTCAGT GACCCTCAAT GGCAAGCCAG TGCACACTAC
AAGGCTGGCG ATTATGATGA AGCCTTAGCC CTATTTGAAC AAGATGAGAG TGCAGCAGGC
CTTTATAATC AAGGGAATGC CCTGATGCAA CAGGGTAAAT ATGACGAAGC TATCAAGCGA
TACGAGCGTG CCGTCAAGAA AAACCCTGAG CTTAAAGATG CACAAGAGAA CTTGGAGTTA
GCTAAAAAGT TAGAAGAACA GAAGCAGGAG TCATCGGAAC AGGATGAAGA CTCTGGTCAG
GGAGATCCCT CTGACAAAGA TGAGAACTCA GACAAAGAGA AAGAGTCGAA ACAGGAGAAA
GGTTCTGATA AGGGGGATGG CTCTGAACAG GAGAACAAAC CTGGGCAAGA TGAAAACTCA
GAGCAAGGTA ATAACGCTAA TCAAGACGAG CAATCGGATC AAGAGCAACA AGCTTCAGAC
CCCGCTTCGC AGGAAAATAG TAATGAATCT GAAATGCAGG CCGATCCCGA CAAGAAAGAG
GCTGAAAAGC CCGAAGGTGA AGAGACTCAG CAATCATCTG ACTCGGTAGA GCAAAACGCT
GAGAGTGCCG AAAAGGAACA ATCTAAAGCT GCGCAAGCCC AAGCAGAGAT GGGCGAAGAG
GGTCAGGAAC AATCTACAGA TGAGGCAACG GCTGCTCAGC AGGCGCAAAC TCAGGATGAA
CTTCCACCTG AGATGGAGCG CGCATTAAGG GCATTAGCCG ACGATCCCCA AGTTTTGCTT
CGCAATAAAA TGCAGCTGGA ATATCAGAAA CGTCGCAGAC AAGGTATGTC TTCGCAGGAA
CAAGAACAAT GGTAA
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| Protein sequence | MLHFLRPEWF LALLPLVIIM WLLWRTEQAN STWNRYISPH LAALLVTKTK NVKRPSLSYL
AVSWLIAVFA LSGPAFTQQS LPVFEAAQGR VIVMDMSLSM YATDQAPNRL SQAKFKATDL
IGELTEGETG LVAYAGDAYT ISPLTRDRST LLNLLPTLSP DIMPSRGSNL VAALEQSKNL
LAQGGHIRGD ILLLSDGIPP RQLNEAKKVL KGTQYRLGIL AFGSEQGSPI RLPDGQLLRD
NANQVVVAKT NYLQLNELAQ EADGILIPFR TDGQDLEQLL TWLSTTGETK ATELDGEVWQ
DAGPFIALLL LIPVLLSFRH GLVCAALVCI IYQPTPALAS SWDDVWQTKN QQGMEAYQAQ
EYQGASEKFS DPQWQASAHY KAGDYDEALA LFEQDESAAG LYNQGNALMQ QGKYDEAIKR
YERAVKKNPE LKDAQENLEL AKKLEEQKQE SSEQDEDSGQ GDPSDKDENS DKEKESKQEK
GSDKGDGSEQ ENKPGQDENS EQGNNANQDE QSDQEQQASD PASQENSNES EMQADPDKKE
AEKPEGEETQ QSSDSVEQNA ESAEKEQSKA AQAQAEMGEE GQEQSTDEAT AAQQAQTQDE
LPPEMERALR ALADDPQVLL RNKMQLEYQK RRRQGMSSQE QEQW
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