| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1621 |
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| Symbol | |
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| ID | 5611562 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1934616 |
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| End bp | 1935179 |
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| Gene Length | 564 bp |
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| Protein Length | 187 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640932491 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_001473360 |
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| Protein GI | 157374760 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0123754 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000300088 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTTAGTC GCTCGCGAAA TAAAAAGTCT AGTTCCACGG TCAATTCAGA CATGCTTAGT
AAACAAAGAC GATACGATAG CCTTGTCAGG GCACTTCACG CCGACATATT CCGTTACGCC
TACTGGCTTT GCGGCGATAA ACATGTCGCT GAAGATATCA CTCAAGAAAC CTTCCTAAGG
GCCTGGCGCT CGCTTGAATC TTTAAAAGAT GATAAAGCGG CTAAAGCTTG GTTAATCACG
ATTCTGAGAA GAGAAAATGC GCGTCGATTT GAGCGTAAAC AGTTTAATTA CTCAGATGTA
GAGCAGGATC ATCTTGAAGA TCAATTATCA AGCAGTTCTG AAGATCAGGC TGAACAACAC
TTAATTCGTC GACAGATAGC CAAGTTAGAA CTCGAGTATC GCGAACCTTT ACTGCTGCAA
GTTATTGGTG GTTTTAGTGG CGAGGAGATC GCGGGTATTT TAGACCTTAA CCGAAATACC
GTTATGACCA GACTCTTTCG CGCAAGAAAT CAACTTAAAG ATGTTATTGA ACAACCCCAA
GCAAGAGGTC AATCCAATGG ATGA
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| Protein sequence | MFSRSRNKKS SSTVNSDMLS KQRRYDSLVR ALHADIFRYA YWLCGDKHVA EDITQETFLR
AWRSLESLKD DKAAKAWLIT ILRRENARRF ERKQFNYSDV EQDHLEDQLS SSSEDQAEQH
LIRRQIAKLE LEYREPLLLQ VIGGFSGEEI AGILDLNRNT VMTRLFRARN QLKDVIEQPQ
ARGQSNG
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