| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1591 |
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| Symbol | |
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| ID | 5612025 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1901458 |
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| End bp | 1902150 |
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| Gene Length | 693 bp |
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| Protein Length | 230 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932461 |
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| Product | amino acid ABC transporter periplasmic protein |
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| Protein accession | YP_001473330 |
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| Protein GI | 157374730 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.115336 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTAATG ATATTCATCA TGGTATCGAT CTCGATATCG TCGAAGCGGT ACTCAGGCGT
CTCGGTCATG ACGTCTCCTA TGAGTTTATG GGGCTTAAAC GTGCGCATCG AGAGCTGAAA
TTAGGAAGAG TGGATGTGAC GGCCCCTGTT TTTATGCAGG CGGACGGCGA AGGTAGCTAT
ATCTCTGATT CAATTGTTCT TTATCAACCT ATGGTCTTCT CTCTTAAAGT CAGTGGTCTT
AAGCCAGAGA CAATATCAGA TCTACAGGAC CACAGTCTGC TGACCTTTCA GGGGGCGCCG
GGATACTTCG GCGAATCGTT TAAACAGGTC GCCCGGGGAG ACTCATATCA GGAGTTGACC
GATATGGGGG CGATCGCAGA ACTGTTAACT AAAGGTCGTT ATGAGTATGC GGTATTAGAT
AAATACATTT TTTATTACTA TTACCGCCTG AATGATAAAC AGCGTGATGT GACTATCTTT
ACTGAACACA AGTTGATCCC GCCAGTGCCT GCCAGCAGTG CCTTTCACGA TGAAAAATTA
AGGGACGAGT TTAACCGGGA GTTGCAGCTG TTTATGAAAA GTCAGGAATA TAAACAGATA
TTCGAACGAT ACCTGGGTTC AGCCTTGCTC AGTATCGAGC TATCAACTCC CGAGTCTGAA
TTTGAACCTG AAGCGGATTT CAGGTTCAAT TAG
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| Protein sequence | MINDIHHGID LDIVEAVLRR LGHDVSYEFM GLKRAHRELK LGRVDVTAPV FMQADGEGSY
ISDSIVLYQP MVFSLKVSGL KPETISDLQD HSLLTFQGAP GYFGESFKQV ARGDSYQELT
DMGAIAELLT KGRYEYAVLD KYIFYYYYRL NDKQRDVTIF TEHKLIPPVP ASSAFHDEKL
RDEFNRELQL FMKSQEYKQI FERYLGSALL SIELSTPESE FEPEADFRFN
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