| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1561 |
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| Symbol | |
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| ID | 5613184 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1863047 |
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| End bp | 1863364 |
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| Gene Length | 318 bp |
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| Protein Length | 105 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640932430 |
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| Product | helix-hairpin-helix repeat-containing competence protein ComEA |
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| Protein accession | YP_001473300 |
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| Protein GI | 157374700 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1555] DNA uptake protein and related DNA-binding proteins |
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| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region
[TIGR01259] comEA protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.230085 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0000735026 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAAACACA CAGTGATTAC TGCGTTATTT ACCGCTGCCC TATTATCTCT GAATATCAAC
ATTGCCGAGG CTAAGACCAA AAGCCCGGAA GTCGATGTCG TTCAACCACA AAGCCAACAT
CAGAGTATCA ATATCAATAT CAATACCGCA TCCGTTCAAG AGCTGGTCTT GCTCAATGGG
ATCGGCGAGT CCAAGGCACA AGCGATAATT GATTATCGTA CCAGCCATGG ACAGTTCGAT
TCCATTAACG ATCTTGTCAA AGTGAAGGGC ATAGGGACAA AATTAGTTGA AAAGAATAAG
GGAGTGATCA CTTTGTAA
|
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| Protein sequence | MKHTVITALF TAALLSLNIN IAEAKTKSPE VDVVQPQSQH QSINININTA SVQELVLLNG
IGESKAQAII DYRTSHGQFD SINDLVKVKG IGTKLVEKNK GVITL
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