| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1560 |
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| Symbol | |
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| ID | 5613183 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1861251 |
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| End bp | 1862648 |
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| Gene Length | 1398 bp |
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| Protein Length | 465 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932429 |
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| Product | anion transporter |
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| Protein accession | YP_001473299 |
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| Protein GI | 157374699 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0471] Di- and tricarboxylate transporters |
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| TIGRFAM ID | [TIGR00785] anion transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.251545 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000139905 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCTATGG AACAAACCGA AGCATATTTA ACTGAGCCAA CCCCCTCAGA GAGCAAAGCA
CAGAGAAACT ATCTTATTTT GTTTGCCGAT ATAGCCCTGT TTATAATGCT TTATAATTTC
CTTCCTTTCG AAGAAGGCAT TAACACAGGG CTTTCCATTC TCATCTTTGC CGCGATCCTT
TGGCTGACAG AGGCTATCCA CATCAGTATC ACCGCCATAC TCATTCCTAT CCTGGCCGTG
GTATTAGGTG TATTTGAAAC GAAAACGGCA ATGAGTAATT TTGCCAATCC GATCATCTAC
CTCTTTTTTG GTGGTTTCGT TCTTGCTGCG GCACTGAATC AACAGGGAAT AGATAAGCTC
ATAGCCCATA GGGTGCTTAC TGCATCGAAA GGCAAGCTCA GCCTTGCCTG TATGTTTTTG
TTCGGCATAA CGGCTCTGTT ATCCATGTGG ATAAGCAATA CGGCAACGGC TGCTATGATG
CTGCCACTCG CATTGGGCAT TTTGCAGCAA CTCGACTTTA AAGAGCATAA AAAAACCTAC
CTGTTTATGC TTCTGGGCAT AGCATATTCC GCTAACATAG GTGGTATTGG TACCTTAGTG
GGTAGCCCTC CAAATGCAAT CGCTGCAGCC CAAGTCGGCC TAAGCTTCAG TGATTGGTTA
GAGTTTGGTC TTATCACTGT AGCCTTAATG CTCCCGACCA TGCTTATTGC CCTGTATCTA
TTCTTAAAAC CGGATCTTTC AGTCATCTGT AAGTTATCGA CTTCAGAGAC CAAATTAAAT
TTTCAAGGCA AGCTTACCCT ATTGGTCTTC ATTACAACTG TGTGTTGTTG GATATTCAGT
AAACCCATTT CACAGGCACT CGGCGGGATC TCAAAATTCG ATACAGTAGT AGCCCTAAGT
GCAGTTGTTA CCTTAGCTGG CCTTGGTTTA GTCGACTGGA AGAGAATTGA ACGCACTACC
GACTGGGGCG TACTCATCCT GTTTGGTGGC GGTTTAACCT TAAGCGCAAT ATTGAAAGCC
ACTGGAACCA GTGTCTTTCT GGCACATTGG GTTACCGATA TCTTTGGTAA CACCCATATG
GCACTCTTCA CCTTTGCCGT GATCTTCTTT GTTGTCATGT TAACCGAATT TGCCAGTAAT
ACGGCCAGTG CCGCGCTACT CGTACCTGTG TTCGCTGCAA TCGCAGAGGC ACTAGGGCTA
TCACCCGTCA TGTTATCGGT ATTAATTGGT ATTGCAGCCT CTTGCGCCTT TATGCTGCCC
GTCGCAACGC CACCTAACGC CATTGTTTAT GGCTCAGGCT TTATCAAACA ATCGGAGATG
ATGCGAGCGG GTGTCATCAT TAACTTTATC AGTATGTTTG TGTTGTATAT CATCGCCCAT
ACGTTCTGGA ATATTTAA
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| Protein sequence | MSMEQTEAYL TEPTPSESKA QRNYLILFAD IALFIMLYNF LPFEEGINTG LSILIFAAIL
WLTEAIHISI TAILIPILAV VLGVFETKTA MSNFANPIIY LFFGGFVLAA ALNQQGIDKL
IAHRVLTASK GKLSLACMFL FGITALLSMW ISNTATAAMM LPLALGILQQ LDFKEHKKTY
LFMLLGIAYS ANIGGIGTLV GSPPNAIAAA QVGLSFSDWL EFGLITVALM LPTMLIALYL
FLKPDLSVIC KLSTSETKLN FQGKLTLLVF ITTVCCWIFS KPISQALGGI SKFDTVVALS
AVVTLAGLGL VDWKRIERTT DWGVLILFGG GLTLSAILKA TGTSVFLAHW VTDIFGNTHM
ALFTFAVIFF VVMLTEFASN TASAALLVPV FAAIAEALGL SPVMLSVLIG IAASCAFMLP
VATPPNAIVY GSGFIKQSEM MRAGVIINFI SMFVLYIIAH TFWNI
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