| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1553 |
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| Symbol | |
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| ID | 5612198 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1854505 |
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| End bp | 1855572 |
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| Gene Length | 1068 bp |
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| Protein Length | 355 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932422 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_001473292 |
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| Protein GI | 157374692 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG1221] Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain |
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| TIGRFAM ID | [TIGR02974] psp operon transcriptional activator PspF |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000495101 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGCCAAATC AATTTCAGCA AGATAATCTC ATCGGACAAT CTAATGCACT GTTAGAAGTA
TTGGAGCACG TGTCTCAAGT TGCGCCTCTT TCCAAGCCGG TATTGATCAT CGGCGAACGA
GGCACGGGTA AAGAGTTAAT AGCTGAACGC TTACACTATC TGTCTACGCG ATGGGATCAA
AGTTTTATTA AGCTTAACTG CTCCTCTCTT AGTGAGAATT TACTCGAAAG TGAATTGTTT
GGCCACGATG CAGGGGCCTT TACCGGTGCG AGTAAGAAAC ATGAAGGACG GTTCGAAAGA
GCTCACGGTG GTACACTTTT CCTCGATGAG CTGGCGAATA CTTCAGGGTT GATTCAGGAG
AAGCTACTCA GAGTCATCGA ATATGGTGAG TTTGAGCGCG TCGGGGGCAG CAAAACAGTC
CAAACCGATG TGAGACTCGT CTGTGCAGCC AATGAAGATC TCCCCTCATT AGCGGATGCA
GGAGAGTTTC GTGCCGATCT GCTCGATAGG CTGGCCTTCG ATGTGATCAC CTTGCCACCT
CTACGCCATA GAACAGAAGA TATCATGCCT CTGGCCGAAT ATTTTGCGGT CGGTATGGCA
AGGCAACTGA AAATGGAACT ATTTGAAGGT TTTAGTCCAA GGGCGATACA GCAACTCATG
GAATATTCAT GGCCGGGGAA TATTCGTGAA ATAAAGAATG TGGTCGAACG CAGCGTTTAT
CGTAATGCGG AAACGCAGGC ACCGATAGCC AATATTATTC TGGATCCTTT TGCATCTCCT
TATCGACCGA CACAAAGAGT GAAGACCCTG GAGCGCCAGC AATCGATGCC ATCGGTAGAA
CCTGCGCCTG TACAGAACGC CAATCCAGAT AGTCAAAATC CTTCCTCGGA AGTCATTAAT
TTTCCGATTG ATTTCAAAGA TCATTGTGAA GGTCTTGAAG TTAATCTACT AAAACAAGCA
TTAGAAGCGG GTCAATTTAA TCAAAAGAAA ACCGCCGAAC TCTTAGGCCT AAGTTACCAT
CAACTGCGCG GGATCCTAAA AAAATACAAC CTTCTCGATA AAACTTAA
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| Protein sequence | MPNQFQQDNL IGQSNALLEV LEHVSQVAPL SKPVLIIGER GTGKELIAER LHYLSTRWDQ
SFIKLNCSSL SENLLESELF GHDAGAFTGA SKKHEGRFER AHGGTLFLDE LANTSGLIQE
KLLRVIEYGE FERVGGSKTV QTDVRLVCAA NEDLPSLADA GEFRADLLDR LAFDVITLPP
LRHRTEDIMP LAEYFAVGMA RQLKMELFEG FSPRAIQQLM EYSWPGNIRE IKNVVERSVY
RNAETQAPIA NIILDPFASP YRPTQRVKTL ERQQSMPSVE PAPVQNANPD SQNPSSEVIN
FPIDFKDHCE GLEVNLLKQA LEAGQFNQKK TAELLGLSYH QLRGILKKYN LLDKT
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