| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1540 |
|---|
| Symbol | tig |
|---|
| ID | 5610605 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 1838635 |
|---|
| End bp | 1839939 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640932409 |
|---|
| Product | trigger factor |
|---|
| Protein accession | YP_001473279 |
|---|
| Protein GI | 157374679 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0544] FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) |
|---|
| TIGRFAM ID | [TIGR00115] trigger factor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000721258 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0000390702 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGTTT CTGTTGAAAC AACACAAGGC CTAGAGCGCC GTCTGACCAT TTCTGTTCCT
GCTGAGCAGA TTGAAAAAGC GGTTACAGAT AGTTTAAAGA ACGAAGCTAA GCGTGCTCGT
ATCCCAGGTT TCCGTCCTGG CAAGGTACCA GTAAGTGTCA TCAACAAGCG TTATGGCAAG
GCAATTCGTC AAGACATCAC TGGTGAAGTG ATGCAGCGCA ATTTCATCGA AGCTATCATT
GCTGAGAAAT TGAACCCAGC TGGCGCACCA ACATTTGTTG CCGGTGACAC AGATACTGAA
AACTTCAACT TTGTTGCTAC TTTCGAAATC TACCCAGAAG TAGAGCTAAC AGGTCTAGAT
GCAATCACTG TTGAGCAGCC TACTTCAGAA GTGACTGACG CTGACGTTGA TACAATGATC
GAGACTCTAC GTAAGCAACA CGCGACTTTC GAAGCGGTTG AGCGCGAATC TGTTGTCGGT
GACAAAGCTA AGATCAACTT TGTTGGTTCA ATCGACGGTG AAGAGTTTGA AGGCGGAAAA
GCTGAAGATT TCGAACTTGA ACTTGGTAGC GGCCGCATGA TCCCTGGTTT TGAATCAGGC
GTTGAAGGTC ATAAAGCGGG TGAAGAGTTC GATATCGAAG TCACTTTCCC TGAAGATTAC
CATGCAGAAA ACCTAAAAGG TAAAGTTGCA AACTTCGTTA TCACATTAAA CGAAGTACTA
GCAGCTAACC TTCCTGAAGT TAACGACGAA TTTGCTAAAC TATTCGGCGT AACAGATGGT
GGTTTAGAAG CACTTAAAGC TGAGATCCGT AAGAACATGG GTCGTGAACT TGAACAGGCG
CTTAAGGCGA ATGTTAAAGA GCAGGTTCTT AATGGTTTGC TCGAGCAAAA CAACATCGAA
CTTCCTAAGC CTCTTATCGA TGGTGAAGTT GAAGTGCTAC GTAAGCAGGC AATGCAACGT
TTCGGTGACC AAGCCGCTAA CATGCCTGAA CTACCAGCTG ATCTGTTCAC AGAACAAGCA
GAGCGTCGTG TAAAAGTAGG CCTGTTACTA GGTGAAGTCA TTAAGACTAA TGAGCTGAAA
GCTGAAGATG ATCGTGTTCA ATCACTTATC GCTTCTATGG CTTCTGCTTA TGAAGATCCA
AGTGAAGTTG TTGCTTATTA CAATGGCAAT GAAGAGATGT TGCAGAACAT GCGTAACGTC
GCTCTTGAAG AGCAAGCAGT TGAAGCTTTG TTAAAAACTG CAAAATTAAC TGAAAAAGCA
GTCAATTTTG AAGAATTTAT GAACAAGGCT ACTCAACAAG GCTAA
|
|---|
| Protein sequence | MQVSVETTQG LERRLTISVP AEQIEKAVTD SLKNEAKRAR IPGFRPGKVP VSVINKRYGK
AIRQDITGEV MQRNFIEAII AEKLNPAGAP TFVAGDTDTE NFNFVATFEI YPEVELTGLD
AITVEQPTSE VTDADVDTMI ETLRKQHATF EAVERESVVG DKAKINFVGS IDGEEFEGGK
AEDFELELGS GRMIPGFESG VEGHKAGEEF DIEVTFPEDY HAENLKGKVA NFVITLNEVL
AANLPEVNDE FAKLFGVTDG GLEALKAEIR KNMGRELEQA LKANVKEQVL NGLLEQNNIE
LPKPLIDGEV EVLRKQAMQR FGDQAANMPE LPADLFTEQA ERRVKVGLLL GEVIKTNELK
AEDDRVQSLI ASMASAYEDP SEVVAYYNGN EEMLQNMRNV ALEEQAVEAL LKTAKLTEKA
VNFEEFMNKA TQQG
|
|---|
| |