| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1529 |
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| Symbol | |
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| ID | 5613222 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1823757 |
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| End bp | 1825892 |
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| Gene Length | 2136 bp |
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| Protein Length | 711 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932395 |
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| Product | outer membrane protein, putative |
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| Protein accession | YP_001473268 |
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| Protein GI | 157374668 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03509] decaheme-associated outer membrane protein, MtrB/PioB family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAAAC GAATTTTAAA TCCCGCTCCT TATACAGGAC TGCTACCAAT AAAACTAAGT
TTGGTCGCCA TGGCGATAGG CAGCCTATTG TCACCGGCAT ACGCAGATGG TTATGGTTTA
TCTCAGGCTA ATCGTGCAGC CGTAAAACTG GATAAATGGC AGTGTAAACG CTGCAGTGTA
TCGACCGATA CAAGGGGGTC TATAGGTGCT GGAATTGCCT ATAACGATGG AACCGATAAC
CGTTTCGGTA ATACCAGCGG CACCAATGAA GACGGCGCAG TTGGCCACCT GGAAGCCGAT
ATTCTGTTAA AAAATAAATC CGGATATCAG ACCCGAATCG AAGCCGACAA GCTTGGATAT
GACAGTGGCA GCGCTCAAGT GTCTACCGGT GCTCCGGGAC AATATAAAGT TGTCTTAGGC
TATCGGGGAA TTGCTAACTA CGATACCAGC AGTGCATTAA CGCCCTATTT GGTTGATGGC
GATAAGATGA ATTTGCCGGA CAATTGGCAA ACAGGCGCTA CAACGGGGCA AATGACTGAA
CTTTCAGGCA GTGCAGCCCC TGTTGCACTC AAGACTCAAC GCGATAGATT TACTCTCGGA
GCAGGTTATA CCGGTAGCTT CTATAAGGCA GAGCTGGATT ACCGACATGA AGATCGAAAA
GGTAAGCGGA CCTTCAGTGG TAACTTGCTG ACCAACAGCG TCATGCTGGC TCAACCCATC
GACGATTCGA CCGATAACCT AGGGGCAAAA ATCTACTTTA ACGGCGCTAA CTGGCTAGCC
GGTGTCGATG CCATGTTAAG TCATTACAAC AATGACCATG ACGCCATCAA TTGGCAGTCA
GCCTTCACAC CTACTTTTGG TGCGGCATAT AGAGGACAGA GTGCGACAGC CGCCGATAAC
AGAGCCTACC GTATCGCGGC CAATGCGCAG CTGGGCAGTA ATGGACACCA GGTACTGATG
CATACCGGCT TTAGCCGTTT CAGCCAAGAT GAAACCTTTC TCCCGGCAAC CATCAATGGC
CCATCTCCTA CCCTACCGCA ATCCAGTTTA GATGGGCAGG TCGACATGAT AGAGATGACG
CTCAAATATT CCGGACGAAT TACACGAGAG CTCAGTATAC GTGCAAGCTA TGACTACAAG
GACAGGGACA ACAAAACCCG GGTTCTGAAT ATGCCCCAGG TGATCACTGA CAGCTATTAT
GCCGGGACGG CTATCAATCC TGAATATGAC CATACCAGGC AGAAAGCCTC CTTCGCGGCT
AAGTATCGAT TCAGCCGCAA CATCTATCTG GATACGGGTT ATCGATACGA TCATAACAGA
TACAGCGATC TCGATAGGGA AACTCTTCAA GAATCAGGTG TATATGGAAG GCTGAACTAC
CGCCCTTCCC AAGCCTGGTC TTTTGGCTTA AAAGCGGACA TTAAGGATAG AAGTGGTAGC
GAATACGGAG TCGTGACCAG CACATCGAGT ACGAGCAATC CACTGATGAG AAAATCTTAC
CTCGCCGATA GAGAGCATCA GGAATACCGT TTACAGGCCG ATTATAATGG CTCGGGGGCA
TTATCTGCCA GCGCCAACTT GCACACTAGC CATGATGATT ATACCGATAC AAACATTGGA
CTTACCGACG TTAAAACATC AGGTTATTAC ATCTCGGCTC AGTATCTGAT AGATGACGAT
TTAAGCTTAA ATGCCTTTTT CAACCAAGAT TGGCGCGATA GCGAACAGGC CGGTAGCAGT
AATTTCGGCA GTGCAAACTG GTATGCCAAT TTAGATGAGC GCTCCACACT CGTTGGCGCA
GGGATGCAAT ATCAAAATCT GATAGACAGC AAGCTCTCTC TCGGGCTCGA TTACAACTAT
TCAGATGGCC AGAGCGACAC AGAGATAACT CAGGGCTTCA CCTCCCCCTA CGGTGATTAT
TTCTCGACTA AACACAATAT CAATGCATTT GCCGACTATC GATTCAGTGA AAAGATGGCA
ATTCGTATCG ATTGGATATT CGAACAATAT GAAGATGCCG ACTGGAGTAA CCAGGGGATA
ACCTTAGACG CAATACCGAA TGTACTTACC TTCGGCTCTC TCAGCCACGA TTATAGTGCC
CACTACCTTG GGTTGACGTT AAGTTATCAC CTTTAA
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| Protein sequence | MNKRILNPAP YTGLLPIKLS LVAMAIGSLL SPAYADGYGL SQANRAAVKL DKWQCKRCSV
STDTRGSIGA GIAYNDGTDN RFGNTSGTNE DGAVGHLEAD ILLKNKSGYQ TRIEADKLGY
DSGSAQVSTG APGQYKVVLG YRGIANYDTS SALTPYLVDG DKMNLPDNWQ TGATTGQMTE
LSGSAAPVAL KTQRDRFTLG AGYTGSFYKA ELDYRHEDRK GKRTFSGNLL TNSVMLAQPI
DDSTDNLGAK IYFNGANWLA GVDAMLSHYN NDHDAINWQS AFTPTFGAAY RGQSATAADN
RAYRIAANAQ LGSNGHQVLM HTGFSRFSQD ETFLPATING PSPTLPQSSL DGQVDMIEMT
LKYSGRITRE LSIRASYDYK DRDNKTRVLN MPQVITDSYY AGTAINPEYD HTRQKASFAA
KYRFSRNIYL DTGYRYDHNR YSDLDRETLQ ESGVYGRLNY RPSQAWSFGL KADIKDRSGS
EYGVVTSTSS TSNPLMRKSY LADREHQEYR LQADYNGSGA LSASANLHTS HDDYTDTNIG
LTDVKTSGYY ISAQYLIDDD LSLNAFFNQD WRDSEQAGSS NFGSANWYAN LDERSTLVGA
GMQYQNLIDS KLSLGLDYNY SDGQSDTEIT QGFTSPYGDY FSTKHNINAF ADYRFSEKMA
IRIDWIFEQY EDADWSNQGI TLDAIPNVLT FGSLSHDYSA HYLGLTLSYH L
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