| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1523 |
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| Symbol | |
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| ID | 5613299 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1811126 |
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| End bp | 1813237 |
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| Gene Length | 2112 bp |
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| Protein Length | 703 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932389 |
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| Product | outer membrane protein precursor MtrB |
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| Protein accession | YP_001473262 |
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| Protein GI | 157374662 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR03509] decaheme-associated outer membrane protein, MtrB/PioB family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.415633 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAATTCA AATTAAATTT AGTCACCCTC GCTCTACTTG CTAACGCAGG TGTTGCCGGA
ACTTTAATGA CTAGTACCGC AGTCGCAGCC GAAGGCTACG GTCTTCAAAA TGCGAACACG
AGTAAAGTTA AGTTCGAGAA GTGGGTCTGT AAGCGCTGTG AAGTTGAAAC CGGCTTTGCC
GGCACAGTCG GTGTCGGCGT GGGCTACAAC GACAGTGATG ACATTCGTTC GGCAAATGCT
TTTGCCGCCG AAGATGAGTT TGCAGGCAAG GTCGACGCCG ACCTTACCTA TGCAGGCAAA
GGTGGTTACC GAGCCAGCAT CGAAGCCGAT AATCTTGGCA TGGAAAATGG CCGCTTAGAT
ATCAATGCCG GTAAAGCGGG TCAGTACAAC CTGAACCTGA ATTACAGACA GATTGCGACC
TACAAGACTG ACAGTGCAAT GACCCCTTAC CAAGGTGTCG GTGGAGATGA CCTCACCCTA
CCCGGTAACT GGCAAACTGC AGGTTCCAGC AACGAGATGA GCCAGCTCTA CTCCAGCTTG
AACCCAACAG AGCTATCGCT TAAGCGTAAG CGCGCCGGAA TGGGGATAGA GTACCAAGGT
GAAGAGCTTT GGAGCACTTA CGTTAACTAT CAGCGTGAGG ATAAATCAGG CCTTAAGCAA
ACATCGGGTA GCTTCTTTAA CCAGTCTATG ATGCTTGCCG AGCCTGTTGA TTACACCACT
GATACTATCG AAGCAGGCAT TAAGCTTAGA GGCGACAACT GGTTTACAGC CATCAACTAC
AATGGCTCTA TCTTCAAGAA TGAATATAGC CAGTTAGGCT TCGATAACGC GTTTAACCCA
ACTTTCGGTG CAGCGACTCG CGGTTATATG TCACTCGATC CGGATAATGA ATCTCATACT
GTTTCATTGA TGGGGCAAGT GACCGCCGAT AAGACGATCA TGAGTGGTCG TGTCCATTAC
GGTCAGATGA CTCAAGATCA AGAGTTTGTG ACTTCCGGTT ATGGTTATCA AGCACCGGCT
GAATCTCTCG ATGGCCGTGT CGATATGACA GGGGTTAACC TCAAGTTAAT CTCACGCATA
AATCGTAGTG TTCGCCTTAA TGCCAGTTAC GACTACACAG ATCGTGACAA CAAGACCAAT
GTTGAGCAGT GGACACAGAT CAGTATCGAC GATGTGAATG GTCAGGCGGC TTATAACACG
CCTTACGATA TCACCACCCA ACGCGCTAAG TTAGGTGTCG ATTATCGTAT TACCCGTGGA
ATGAAACTGG AAGCCGGCTA CGATTACCGT ACCGATGACC GCAGTTACCA AGATCGCGAA
ACCACTAACG AACATACGCT TTGGAGTAAA TTCCGTCTAA GCGCGTTTGA AAACTGGGAT
ATGTGGATCA AAGGTAGTTA TGGCGAGCGT GATGGTTCTG AATATCAGGC ATCTGAGTGG
ACTTCGTCGG AGTCAAACGA CCTGTTACGT AAGTACAATA TGGCCGACCG TAAGCGTACT
ATGATTGAAG CTCGTGTGAC TCACAGTCCA ATCGATACGC TTACAGTAGA CTTTGGCACT
CGTTACGCAA TTGATGACTA CAACGACACT CAAATCGGTC TGACCGAGTC TAAAGATTTG
AGTTACGATG CTAGCGTCAG TTACCTACTC AACGATGATA TGACTGTGAC GGCCTTCTAT
AACCGTCAGA ACATCGACTC AGATCAGGCT GGCAGCAGCA ACTTCGCCGC GCCAAACTGG
ACTGGTACAG TCGAAGATCA GGTCGATGTT ATCGGTGCAG GATTTAGCTA TAACAACTTG
ATGGAGAAGA AGTTACGTTT AGGCGTTGAC TACACTTACT CTGATTCAGA CAGTAACACT
CAAGTCACTC AAGGCATTAC CGGTGACTAC GGTGATTACT ATGCTAAATC ACATAACGTC
AACATCTATG GTCAATACCA AGCCACACCA AAAATGGCTC TGAGATTAGA TTATAAGATG
GAGAAGTACC AGGATAATGA TGCAGCAAAT GAGATTGCAC CAGATGGTAT CTGGAATGTA
GTCAGCTTTG GCTCTAACAG CCACGACTAT ACCGCACACC TCATCATGTT GAGCATGAGT
TACAGACTGT AG
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| Protein sequence | MKFKLNLVTL ALLANAGVAG TLMTSTAVAA EGYGLQNANT SKVKFEKWVC KRCEVETGFA
GTVGVGVGYN DSDDIRSANA FAAEDEFAGK VDADLTYAGK GGYRASIEAD NLGMENGRLD
INAGKAGQYN LNLNYRQIAT YKTDSAMTPY QGVGGDDLTL PGNWQTAGSS NEMSQLYSSL
NPTELSLKRK RAGMGIEYQG EELWSTYVNY QREDKSGLKQ TSGSFFNQSM MLAEPVDYTT
DTIEAGIKLR GDNWFTAINY NGSIFKNEYS QLGFDNAFNP TFGAATRGYM SLDPDNESHT
VSLMGQVTAD KTIMSGRVHY GQMTQDQEFV TSGYGYQAPA ESLDGRVDMT GVNLKLISRI
NRSVRLNASY DYTDRDNKTN VEQWTQISID DVNGQAAYNT PYDITTQRAK LGVDYRITRG
MKLEAGYDYR TDDRSYQDRE TTNEHTLWSK FRLSAFENWD MWIKGSYGER DGSEYQASEW
TSSESNDLLR KYNMADRKRT MIEARVTHSP IDTLTVDFGT RYAIDDYNDT QIGLTESKDL
SYDASVSYLL NDDMTVTAFY NRQNIDSDQA GSSNFAAPNW TGTVEDQVDV IGAGFSYNNL
MEKKLRLGVD YTYSDSDSNT QVTQGITGDY GDYYAKSHNV NIYGQYQATP KMALRLDYKM
EKYQDNDAAN EIAPDGIWNV VSFGSNSHDY TAHLIMLSMS YRL
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