| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1515 |
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| Symbol | |
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| ID | 5613389 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1802495 |
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| End bp | 1803343 |
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| Gene Length | 849 bp |
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| Protein Length | 282 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932381 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001473254 |
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| Protein GI | 157374654 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAAA ACCAAATAGA AAGCCACATT AAAGTGACCT CGTTAGCGTC GGACGCCGCA
GCGTTATTGG CACTGGAATC CGGCTTATCG AAACAGTTAA TCAAACAGGC CATGAATAAG
GGGGCCGTCT GGTTAACGCG TGGCAAGCAC ACTCAAAGAC TACGCCGCGC CAAGAGAGCG
CTGAAAATTG GTGATGAACT CCATCTCTAC TATAACCAAG AGGTACTCGA GCATGAAGTT
GCCGACGCGG AGCTTATTGC TGACGAAGGG CAGTACAGCC TCTGGTATAA ACCTTACGGC
ATGCTCTGCC AGGGTTCAAA ATGGGGCGAT CATACGACGA TTAACCGTTA CGCCGAGACC
CATTTAGCCC CGGACCGTCC CGCGTTTATT ATTCATAGAT TAGACAGAGC CGCCACAGGG
CTTGTGCTTA TCGGTCACAG CAAGAAAACA ACGGCAGCGT TAGCCAAGTT GTTTGAACTC
AGGCTATTAG ATAAATATTA TCAGGTCATC GTTGAGGGGC ATTTTTCAAA TCATGGCGTC
GATGAATTGG TGACTATCGA TAGTGAAGTC GATGGCAAGC CTGCCCGTTC ACATGCAAAG
CAGCTCAAAT ATGATCCCGA GCAAAATCGT TCACTCGTGC AGGTAAAGAT TGAATCCGGA
CGAAAACATC AGATCCGTAT TCATATGGCG TCGATTGGTT ACCCCGTAGT CGGAGACCGC
CAGCACGGCA TTGCCGATGA GTCAGAGGTA AACCTACAAC TGACCTCCTG TTACCTTAAG
TTTCCTTGTC CTATAACCGG CGAAGAGAAG GAGTTTGAGT TACCACAGAG GCTCAGGCCT
GAGCTTTGA
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| Protein sequence | MSKNQIESHI KVTSLASDAA ALLALESGLS KQLIKQAMNK GAVWLTRGKH TQRLRRAKRA
LKIGDELHLY YNQEVLEHEV ADAELIADEG QYSLWYKPYG MLCQGSKWGD HTTINRYAET
HLAPDRPAFI IHRLDRAATG LVLIGHSKKT TAALAKLFEL RLLDKYYQVI VEGHFSNHGV
DELVTIDSEV DGKPARSHAK QLKYDPEQNR SLVQVKIESG RKHQIRIHMA SIGYPVVGDR
QHGIADESEV NLQLTSCYLK FPCPITGEEK EFELPQRLRP EL
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