| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1493 |
|---|
| Symbol | |
|---|
| ID | 5611977 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1773074 |
|---|
| End bp | 1773667 |
|---|
| Gene Length | 594 bp |
|---|
| Protein Length | 197 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640932359 |
|---|
| Product | lysine exporter protein (LysE/YggA) |
|---|
| Protein accession | YP_001473232 |
|---|
| Protein GI | 157374632 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1280] Putative threonine efflux protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0246544 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTGG TTTTAACTAT TGCACTTTTT GCATTCTCAT CTGGAATCAC CCCCGGCCCC
AATAACATCA TGCTCATGAG TTCTGGTGTC AACTTTGGTG TGAAGAGAAG TCTTCCCCAT
CTGTCAGGAG TCTGCATCGG TTTTCCCGCT ATGGTACTCG CAATAGGTTT AGGCTTGAGC
ACAGTGTTTC AGGCATACCC CATCATTCAC TCAATAATTA AGTATGCCGG TATATCTTAT
CTTCTCTACC TCGCCTGGCT GATTGCTAAT AGCAGCAGTA AACTAGAGGG CAAGAACACA
CCCGATCCTT TGAGCTTTAT ACAAGCCGCC GCTTTTCAGT GGGTGAACCC AAAGGCCTGG
ATAATGTCCA TCGGGGCGAT TGCCGCGTTC ACGAGTGTGC AATCTCCATT GCCGCCTCAA
GTACTGACCA TAGCGACCGT TTTTTTATGC GTGGCCATAC CCAGCGCCTT CATCTGGTTA
GGATTCGGAG TGGGCTTAAA ACGGTTATTA AGAAATAGCC GCCAACAAAA AATCTTCAAC
ATCTCTATGG CACTCTTGCT TGTAGCATCT ATCATCCCTA TTATCGCCCC ATAA
|
|---|
| Protein sequence | MELVLTIALF AFSSGITPGP NNIMLMSSGV NFGVKRSLPH LSGVCIGFPA MVLAIGLGLS
TVFQAYPIIH SIIKYAGISY LLYLAWLIAN SSSKLEGKNT PDPLSFIQAA AFQWVNPKAW
IMSIGAIAAF TSVQSPLPPQ VLTIATVFLC VAIPSAFIWL GFGVGLKRLL RNSRQQKIFN
ISMALLLVAS IIPIIAP
|
|---|
| |