| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1485 |
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| Symbol | |
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| ID | 5610560 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1761485 |
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| End bp | 1763743 |
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| Gene Length | 2259 bp |
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| Protein Length | 752 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640932351 |
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| Product | copper-translocating P-type ATPase |
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| Protein accession | YP_001473224 |
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| Protein GI | 157374624 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG2217] Cation transport ATPase |
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| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01511] copper-(or silver)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.391625 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAAGCA TGACTTTATA TGTACCTAAA ATGAACTGCG CCAGCTGTGT TGCCAAGATT
GAGGGGGCGT TTGCAAAGTT AGCTCGGGAG GCATCGGGGG AAAAAGTCGA TGCGCGGGTG
AACCTGGGTG AAAAACAGGT GCTGATCAAC GGCGATATCA CCAGCGAATT GGCCATAGCA
ACGGTAGCCA GTGCCGGCTA TGACAGCGAA TTGGTGCTCG ATGCTAAGCT TGCTTCCGAG
ACCAAGGTTA AAGAGGAAAA TGTTGAGTAC CGTACTCGTA TTATTCAGTC GGCCCTGGGT
CTGGGCCTTG GTATTCCTAT GATGCTATGG GGCTTGTTAG GCGGCGAAAT GATGGTCAAC
AGCCCTGGTC AGCAACTCAT GTGGGGCGCA ATGGGCTTGG TCACCTTAGT GCTTCTGGTC
ACTACCGGAG GACATTTTTA TCAGGGTATG TGGCGTGCCC TCAAGGCTGG CGCGGCCAAT
ATGGATACCC TGATTGTGCT GGGCACCACA AGCGCCTGGC TTTATTCCAT GATAGTGGTG
TTGATGCCTG GCGGGTTTCC GGCCGAGGCC CGGCATGTCT ATTTTGAAGC CAGTGTGATG
ATCTTAGGTT TAATCAACTT AGGTCATGCC CTTGAGCTCA GGGCTAAAGG CAAAACCGGT
GAAGCGGTAC AAAGGCTCAT AGGTTTGCAG TCAACGACCG CTATCAGAGT GACCGATTCA
GGTGATGAAG AGGTTGAGAT CGCTTCTATC AAGATAGGTG ATCGTCTCAG ACTCAAGCCC
GGAGACAGAG TCGCACTCGA TGGTGAAGTG TTATCCGGTC ATTCACAGCT TAATGAGTCT
ATGTTGACCG GTGAGCCTGT TCCTGTGAAT AAATCTGTAG GAGATGCTTT GAGTGCCGGG
ACCGTAAATG GCAACGGTAG CTTAATATTT GGTGTGACTG CAGGGTTAAA CGATACCCGT
CTGGCGAAGA TCATCGAGTT AGTTCAACAG GCGCAAACAT CCAAGTTGCC TATTGGTCGC
CTGACAGACA AAATCTCCGC CTACTTTGTT CCTGTCGTGG TGTTAATTGC ACTGGCTGCG
TCATTTATCT GGTTTATGGC AGGTCCGGCG CCTCAGCTGT CTCATGCGCT TATCGTTCTG
ACCAGTGTGT TAATCATCGC CTGTCCCTGC GCCTTAGGTT TAGCGACGCC AATGTCGATA
ATGGTGTCGG TGGGTAGGGC GGCTCAGATG GGAGTGCTGA TAAAGAACGG TGAGGCGCTG
CAGACGGCGA GCAAGGTTAG CTGCGTGGTA CTCGATAAAA CCGGCACCAT CACCTTAGGT
AGACCTTTGG TTACCGATAT ACTGCTGGCA TCTGGAAATA TCAGTATCGA TGAGCCGGGT
GGAATCGAGA CCTTGTTAAC AAGCGTTGCG AGTCTGGAGC AACACTCAGA GCACCCGCTA
GCCGATGCTA TGTTAAGCGA AGCAAAATCT CGGAAGTTAT CCTTGGTTGA GCCCGAAGCG
TTTACCAATT ATCAAGGTAA GGGCATTGTC GGTGTTGTCG ATGGTCAACA GCTGGCCGTA
GGTAATATGG AGCTGATGAA AATGCAGAGC GTCCGCAACA TGGATGCGCT GGAAGATGAG
GTCATAGAGT TTGCCGAGAT GGGGAAAACC CCGGTATTTG TCGCCCTGGA AGGTGCTTTG
ACGGCGGTCA TCGCCATTAC AGACCCGTTA AAACCCGATG CCTTCGATGC TATCTCGGCG
TTGAAACAAT CGGGTAAGCG CGTGATTTTA CTCAGCGGAG ATAATCTTAA AACGGCGAAT
GCAGTGGCCA AGCAGGTGGG AATAGAGGAG GTGATAGCCG GAGTGTTACC CGAGCAGAAG
CAGCAGCATA TTATCGACCT TAAAAGCAGC GGTGAGATTG TTGCCATGGT GGGAGATGGG
ATCAACGATG CGCCGGCTCT GGTCAGCGCA GACGTGGGAA TTGCCATGGG AGATGGCACG
CAGGTGGCGA TAGAGAGCGC CGACCTGACC TTCCTTTCCG GCAGATTATC TGTCCTGGCC
GATACCTTCT CCCTGGCTAG TGCGAGTATG CGAAACATTA AGCAGAACCT GTTCGGTGCC
TTTATCTATA ATAGTTTAGG CATCCCCATT GCCGCAGGCG TATTGTTTCC CTTTACCGGT
ATGCTGCTTA GCCCCGTTAT CGCGGGAGGG GCGATGGCAT TGTCTTCGCT GACTGTGGTC
ACTAATGCTA ATCGGTTAAG ACACCAGAAG TTGAATTAA
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| Protein sequence | MTSMTLYVPK MNCASCVAKI EGAFAKLARE ASGEKVDARV NLGEKQVLIN GDITSELAIA
TVASAGYDSE LVLDAKLASE TKVKEENVEY RTRIIQSALG LGLGIPMMLW GLLGGEMMVN
SPGQQLMWGA MGLVTLVLLV TTGGHFYQGM WRALKAGAAN MDTLIVLGTT SAWLYSMIVV
LMPGGFPAEA RHVYFEASVM ILGLINLGHA LELRAKGKTG EAVQRLIGLQ STTAIRVTDS
GDEEVEIASI KIGDRLRLKP GDRVALDGEV LSGHSQLNES MLTGEPVPVN KSVGDALSAG
TVNGNGSLIF GVTAGLNDTR LAKIIELVQQ AQTSKLPIGR LTDKISAYFV PVVVLIALAA
SFIWFMAGPA PQLSHALIVL TSVLIIACPC ALGLATPMSI MVSVGRAAQM GVLIKNGEAL
QTASKVSCVV LDKTGTITLG RPLVTDILLA SGNISIDEPG GIETLLTSVA SLEQHSEHPL
ADAMLSEAKS RKLSLVEPEA FTNYQGKGIV GVVDGQQLAV GNMELMKMQS VRNMDALEDE
VIEFAEMGKT PVFVALEGAL TAVIAITDPL KPDAFDAISA LKQSGKRVIL LSGDNLKTAN
AVAKQVGIEE VIAGVLPEQK QQHIIDLKSS GEIVAMVGDG INDAPALVSA DVGIAMGDGT
QVAIESADLT FLSGRLSVLA DTFSLASASM RNIKQNLFGA FIYNSLGIPI AAGVLFPFTG
MLLSPVIAGG AMALSSLTVV TNANRLRHQK LN
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