| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1466 |
|---|
| Symbol | |
|---|
| ID | 5610862 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 1740909 |
|---|
| End bp | 1741775 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640932332 |
|---|
| Product | palmitoyl-CoA hydrolase |
|---|
| Protein accession | YP_001473205 |
|---|
| Protein GI | 157374605 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1946] Acyl-CoA thioesterase |
|---|
| TIGRFAM ID | [TIGR00189] acyl-CoA thioesterase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000203719 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0000792581 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAGG TATTAAACGA TCTATTATCT TTGCTCTCAC TGGAGCAAAT TGAAGTTGGC
TTATTTCGCG GACAGAGCCA GGATCTTGGA TTTGGTCACG TGTTTGGTGG TCAGGTTATG
GGACAGGCGT TGAGTGCGGC TAAACAGACC GTTCCTCCTA CGCGCAAAGT TCACTCTTTT
CACTCGTACT TTCTTCGCGC CGGAGATGAG AAGCTTCCTA TTATTTATGA TGTTGAAATC
ATGCGTGATG GAGGGAGTTT CAGTGCCAGA AGTGTTAAGG CTATTCAGAA AGGCCGTCCG
ATTTTTAATA TGACCTGCTC ATTTCAAGAA CATGAAGAGG GGTTTGAACA TCAGGCGCAG
ATGCCGGATG TACCGGGCCC CGATGGTCTG TTAAACCAGC AAGAGCTTGC CATGACCATG
GGGGACAAGG TACCGACCAA AATGTTAGAA AAGTTTATGG CTGACGCGCC CATCGAGATG
CGTTTGGTCA ACCCGGAAAA TCCTTTTTAT CCCCGTGCCA GAGAGCCTAA ACGTAACATT
TGGATCCGCG CAAATGGCAA GGTGCCCAGC GACCACTCGG TTAATGAATA CCTGCTGGCA
TATGCATCTG ATTTTAATTT TCTTGTGACT GCCGCACAGC CTCATGGTGT CTCATTTTTA
ACGCCAGGTA TGCGTATGGC TACCATAGAT CATGCGATGT GGTTTCACCG ACCATTGGAC
TTGAATGACT GGCTATTGTA CAGCAATGAA AGTCCCCACG CCGGAGGTGG CAGAGGCTTC
GTGAAAGGCC AGTTTTTTAA TCAGGCCGGT GAGCTGGTGG CCTCAGCAAC ACAGGAAGGC
TTGATTAGGT TATCACAGGG CAAATAG
|
|---|
| Protein sequence | MSQVLNDLLS LLSLEQIEVG LFRGQSQDLG FGHVFGGQVM GQALSAAKQT VPPTRKVHSF
HSYFLRAGDE KLPIIYDVEI MRDGGSFSAR SVKAIQKGRP IFNMTCSFQE HEEGFEHQAQ
MPDVPGPDGL LNQQELAMTM GDKVPTKMLE KFMADAPIEM RLVNPENPFY PRAREPKRNI
WIRANGKVPS DHSVNEYLLA YASDFNFLVT AAQPHGVSFL TPGMRMATID HAMWFHRPLD
LNDWLLYSNE SPHAGGGRGF VKGQFFNQAG ELVASATQEG LIRLSQGK
|
|---|
| |