| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1461 |
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| Symbol | |
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| ID | 5610872 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1734400 |
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| End bp | 1735953 |
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| Gene Length | 1554 bp |
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| Protein Length | 517 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640932327 |
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| Product | 6-phosphogluconate dehydrogenase |
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| Protein accession | YP_001473200 |
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| Protein GI | 157374600 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0362] 6-phosphogluconate dehydrogenase |
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| TIGRFAM ID | [TIGR00873] 6-phosphogluconate dehydrogenase, decarboxylating |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00233963 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAAAACC ACTCCAAACT ATACGATGTT GGCGTTATCG GGCTGGGCGT AATGGGCAAA
AATCTTTCCT TGAATATCGC CGATAACCGC TATCGTGTCG CTGCTTTCGA TCTCGATACC
GATAAGATTG AAGGGCTTGT TCAGCAAGAG AGGACTGAAC GAGATCGTAG CCAGCAAATT
GATTTTGAGC TAAGAGTAAA CGGCTGTAGT AATCTTTCTG AAATGTTATC TATTCTCGAA
AAACCCCGTG TTTTGATACT CTCTGTGCCT GCCGGGAGCC CTGTCGATGG GGTATGTAAT
GCGCTTATAG AGGCTGGTAT CGACCATGAT GATATCGTCA TCGATACCGG TAATAGCCTA
TGGACGGATA CGGTAGAGCG TGAGGCTCGT TATGCCAGCC AGTTCACCTT TTTCAGCTGT
GCAGTCTCAG GCGGAGAGAT GGGAGCTCGT TTCGGTCCCT CCTTGATGCC GAGTGGCGAT
ATCAAGGCCT GGGGCAGAAT AAAACCTATC TGGGAGGCTA TTGCGGCTAA AGTCGACCCT
GAAACGGGTT TACCCATTGA GCGCCAAGAG CCCGGTAACC CTGTGACAGA GGGAGAGCCG
TGCACGACCT ATATTGGTCC GGTTGGCTCG GGCCATTATG TCAAGATGGT ACATAACGGC
ATCGAATATG CGGACATGCA ACTCATCTGC GAGGCTTATC AACTACTCAG TGATGGTTTT
GGTATGTCGG CCAGCGAGGT TGGCTCTCTG TTTGAGCGCT GGAGTCAGGG GAGTCTGAAT
AGCTACCTGA TGGAGATCAG CGCCGAAGTG TTAAAGCAAG CCGATCCTAT CTCAGGTAAA
CCACTGGTTG AGATGATTCT GGACAGAGCG GGTCAGAAGG GGACTGGCCT TTGGACGGCG
GTGAGCAGTT TACAGATAGG CTGTCCGGCG CCAACGATTG CCGAGGCGGT TTATGCCCGC
GCCGTGAGTA CTCAAAAAGA GCAAAGACAG ATACTGAGTC AGTTACTTAG TGGGCCGGAT
GCAAATAAGC CAACAGATGA AGAGCGTGAG GCCTTTATCG CTCAGCTTGA GAATGCCCTC
TACTGCGCCA AGATAGCCTG CTATGCTCAA GGCTTTCAGT TAATGGCGAT GACGGCTAAA
GAGAGGCGTT GGGATTTAGA TTTCGCCGAA ATTGCAAAAA TTTGGCGTGC CGGATGTATT
ATTCGCGCCA CCTTCCTGCA GTCCATTACC CTGGCATATC AAACGGCGGC ATCGAACGGA
ACAGAGCTTG AGAACCTACT GATGGCCGAG AGCTTCAGCC GTGCCTTATC ATCGAAGCAG
CTAGATTGGC GCAAGACGGT TTCAACCTCC GTACTCAGAG GGATTCCAGT ACCTTGTATA
AGCTCTGCCC TGGCATATTA CGACAGTTAT CGGTGTGACA TTTTGCCCGC AAATCTGCTT
CAGGGACAAA GGGATTACTT CGGCGCGCAC ACCTTTGAGC GAACCGATGC ACCTGCTGGT
GAAAAGTACC ACCTTAACTG GAGTGATACA GCAAGAGAGA TAAACAGGGT TTAA
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| Protein sequence | MQNHSKLYDV GVIGLGVMGK NLSLNIADNR YRVAAFDLDT DKIEGLVQQE RTERDRSQQI
DFELRVNGCS NLSEMLSILE KPRVLILSVP AGSPVDGVCN ALIEAGIDHD DIVIDTGNSL
WTDTVEREAR YASQFTFFSC AVSGGEMGAR FGPSLMPSGD IKAWGRIKPI WEAIAAKVDP
ETGLPIERQE PGNPVTEGEP CTTYIGPVGS GHYVKMVHNG IEYADMQLIC EAYQLLSDGF
GMSASEVGSL FERWSQGSLN SYLMEISAEV LKQADPISGK PLVEMILDRA GQKGTGLWTA
VSSLQIGCPA PTIAEAVYAR AVSTQKEQRQ ILSQLLSGPD ANKPTDEERE AFIAQLENAL
YCAKIACYAQ GFQLMAMTAK ERRWDLDFAE IAKIWRAGCI IRATFLQSIT LAYQTAASNG
TELENLLMAE SFSRALSSKQ LDWRKTVSTS VLRGIPVPCI SSALAYYDSY RCDILPANLL
QGQRDYFGAH TFERTDAPAG EKYHLNWSDT AREINRV
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