Gene Ssed_1409 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1409 
Symbol 
ID5613709 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1670980 
End bp1671312 
Gene Length333 bp 
Protein Length110 aa 
Translation table11 
GC content43% 
IMG OID640932275 
Producthypothetical protein 
Protein accessionYP_001473148 
Protein GI157374548 
COG category[S] Function unknown 
COG ID[COG2914] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATATAG ATCAAGAAAA TTTTGAGGTA GAGGTTATCT ATGCCTTGCC AACACAACAA 
AAACGTATTC AGATCAAGGT AGCACCGGGT ACGACCTGTA TCGAAGCGGT TAAACAGAGC
GAAATCGATA TTTTCTTTCC CGAGATAGAT CTCGAAAACG TTAAGCTAGG CATTTTCAGC
CGTTTAGTGA AACATCACGA GGTGTTAGTG CCGGGACAAA GGGTTGAGAT ATATCGTCCA
CTTATTGCCG ATCCTAAAGA TGTGCGCCGT AAAAGAGCCG AAAAGGCTAA AGATGAGGGA
CGGATAAATA AGAAGACTGG CGGAAAGGTG TAA
 
Protein sequence
MNIDQENFEV EVIYALPTQQ KRIQIKVAPG TTCIEAVKQS EIDIFFPEID LENVKLGIFS 
RLVKHHEVLV PGQRVEIYRP LIADPKDVRR KRAEKAKDEG RINKKTGGKV