| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1403 |
|---|
| Symbol | |
|---|
| ID | 5613867 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 1662995 |
|---|
| End bp | 1665001 |
|---|
| Gene Length | 2007 bp |
|---|
| Protein Length | 668 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640932268 |
|---|
| Product | outer membrane protein |
|---|
| Protein accession | YP_001473142 |
|---|
| Protein GI | 157374542 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR03509] decaheme-associated outer membrane protein, MtrB/PioB family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGATTTA AACTCAATAT CATCACAGTG TCGTTGCTGG CCGTTTCAGG TTCGGCGATG
GCGACAAACT TCGGTGTCGG TAACGCCAAT ACTGACTCGA TCAATTTTGA TAAGTATGAA
TGTAAACGCT GTGTCTCAAG TGATGGCTAC CGCGGTGAGG TCTCGGTCTC GGCGGGTTAT
AACTCGGTGG ATGATATCCA TGCGGGTAAT GCGCTGGGAA GTGCCGAAGA TGGTGCTATC
GCAGCCGTAA GTGGTGATAT CCGCTATCAA AATGAGACCG GGTATCAGGC TCAGATTCAG
GCTCATCAGT TAGGCATGGA TAACGGCTTT GCCAACATCA AGGTCGGAAA GTCAGGGCTA
TATGAGCTGG AGTTGGATTA TCAGTCGCTT AAGAGTTATC AGGCGGGCGA TGTGCAGAGT
CAGCTTTGGC ATAATGATGG GATGCTAACC CCCAGCGCCT ACACCAATGA GTTTGATCTG
GCGCTAAAGC GTGAGAAGTC GGCGATAGGC TTTAACTATG GAGAGGGGGT TTATAACACC
TTCATCCGTT ATAGCCAGGA GGAGAAGACG GGTCATCAAT CGAGCAGCCT GGTCGCCCCG
AGTCCGGTTA ACTTTGGCTT GCCTGTCGAT GCCACCACTA AGCAGCTCGA TGCAGGGGCA
TCGTTAGCCG GTGATAACTG GTTAACCGAG CTGAGCTATT TTGGTAGTTA CTACAGCAAT
AACATCAAAG ACCTGAGCCT GCCTCATATG AATGATGTCT ACTCGGCAAC GCCGGATAAT
GAGGCTCATC AGGTGTCACT ATCTGGCCAG TACCAGCTAA ATCGTACCGT GATGAGTGGC
CGTCTGGTGA CGGGGCGGAT GATCCAGGAT GACTCGCTTA TTCAGATGAG TGGTAATCCG
CTGCAGAGCT GGGATGGGCA GATAGATACC TTGGATGGTC GTTTTGCCGT GACCTCAATG
TTGAGCAATC GCCTGCGCTT AGGCGGCAGC GTCGATTACA GCAAGCGAGA TAACAAGAGC
TCTGTGTGGG AGTTTACTCA GTACAGCTAC AACGGCTTAA GCGGTGCGTT TAAGCAAAAT
GTTCCTCAGG ATATCGAGCG CAACACCTAT AAGGTCAATG CCAGCTATCG CATCGCCAGT
GGTTACCGTC TGCAAGCCGG TTATGACAGG AAAGAGGTCG ACCGTAGCTA TAGCGAGCGC
GAGCAGACCA ATGAAGATAG CCTGTGGGCC AAATTTAATG TGAGCGCCTT CGACAAGTTC
AATGTCAATC TGAAAGCCAG CCATGGCAAC CGTGGTGGCT CAGATTATGA GGTGAACGAG
GTCACCTCCT CTGAGGAGAA CGCCTTGATG CGTAAGTACT ATCTTGCGGA TCGCAAACGT
AATGCCGTCG AGCTTAAGGT TAACCACACG CCGCTGTCCT GGATGAGTAT CGACGTGATC
GGCCGTTATG CCAAAGACGA TTATGATGCC ACCGAGATAG GCCTGACCGA GTTACAAGAC
TTTGGCTATG ACGTCAATCT TAGCCTGCAG TTTAGCAAGC AGCTGTCGGC TTACGGTTTT
GCCGGTCAGC AGTGGATCAA CTCGGCTCAA GCCGGTAGCC AGAGCTTCTC TGCCCCGGAC
TGGAACGCCG ATATCGAAGA TGAATTTATC AATATCGGTG CCGGCTTCAG TTATGGCGGC
CTGATGCAGG AGAAGATCAC CTTAGGCGGT GATTACCTGT TCAGTAATTC AATCAGTGAC
ACCTCGGTCG GGGGCACCCT CGTCACGGCT GATGCTAGTC AGCCATACGG TGATTACTTC
TCCTATAACC ACAGCGTGCG TATGTATGCC GATTATGCCT TGAGCAAACA GATGGCATTG
AAGCTGAGTT ATCAATATGA ACGATATTAC GACACAGATG CGGCTCAAGT CGCGACGAAT
GCTGTGCCGG GGCTAACCAC GTTAGGTGAG CTTAACCATA ACTATAACGC GCACCAAGTG
ATGCTGTCGT TTAACTACAC CCTGTAA
|
|---|
| Protein sequence | MRFKLNIITV SLLAVSGSAM ATNFGVGNAN TDSINFDKYE CKRCVSSDGY RGEVSVSAGY
NSVDDIHAGN ALGSAEDGAI AAVSGDIRYQ NETGYQAQIQ AHQLGMDNGF ANIKVGKSGL
YELELDYQSL KSYQAGDVQS QLWHNDGMLT PSAYTNEFDL ALKREKSAIG FNYGEGVYNT
FIRYSQEEKT GHQSSSLVAP SPVNFGLPVD ATTKQLDAGA SLAGDNWLTE LSYFGSYYSN
NIKDLSLPHM NDVYSATPDN EAHQVSLSGQ YQLNRTVMSG RLVTGRMIQD DSLIQMSGNP
LQSWDGQIDT LDGRFAVTSM LSNRLRLGGS VDYSKRDNKS SVWEFTQYSY NGLSGAFKQN
VPQDIERNTY KVNASYRIAS GYRLQAGYDR KEVDRSYSER EQTNEDSLWA KFNVSAFDKF
NVNLKASHGN RGGSDYEVNE VTSSEENALM RKYYLADRKR NAVELKVNHT PLSWMSIDVI
GRYAKDDYDA TEIGLTELQD FGYDVNLSLQ FSKQLSAYGF AGQQWINSAQ AGSQSFSAPD
WNADIEDEFI NIGAGFSYGG LMQEKITLGG DYLFSNSISD TSVGGTLVTA DASQPYGDYF
SYNHSVRMYA DYALSKQMAL KLSYQYERYY DTDAAQVATN AVPGLTTLGE LNHNYNAHQV
MLSFNYTL
|
|---|
| |