Gene Ssed_1362 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1362 
Symbol 
ID5610798 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1617225 
End bp1617881 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content51% 
IMG OID640932227 
Productanti-ECFsigma factor, ChrR 
Protein accessionYP_001473101 
Protein GI157374501 
COG category[T] Signal transduction mechanisms 
COG ID[COG3806] Anti-sigma factor 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGCATC TCAATCTGGA TTTTTCTAAA AGAGTCGTGC TCGACTCAAA CACCTTAGAT 
TGGCTTCCCA GCCCACTCGA AGGTGTCACC CGCAAGCCTC TGGCGAGGGA GAACCTGGAG
AGTGGCCATG CCACCAGCAT AGTTCGTTAT CAGGCGGGTT CGCATTTCAG TGCTCATAGC
CACCCAATGG GTGAGGAGAT ATTTGTCTTA GCAGGCACCT TTTCCGATGA AGATGGTGAT
TATCCCCAAG GCACCTATAT CCGTAATCCA CCTAGCAGCT CTCATCGTCC TTTCAGCACG
GCTGGCTGCA CCTTATTCGT CAAACTAAAT CAGTTTGACC CTAACGATAC AGAGCGAGTG
CGTATCGATA CCCGTGCCCT GCCATGGCAA GCAGGAATTG GCGGACTTAA AGTCATGTCA
CTGCATGATT TTGAGGGGCA ACATACCGCA TTAGTCAAAT GGCCTGCCGA TGAGGTTTTT
CAGTCTCACC GACATTTTGG TGGCGAAGAG ATATTGGTGC TGTCAGGGCA GTTTGAAGAT
GAGCACGGCC AGTACCCGAC ACACACCTGG ATCCGTAGTC CGCACCTGAG TGAGCATCAT
CCTTTTGTGA AACAGGAGAC GGTCATTTTC GTTAAAGTGG GGCATCTGCC GATTTAA
 
Protein sequence
MQHLNLDFSK RVVLDSNTLD WLPSPLEGVT RKPLARENLE SGHATSIVRY QAGSHFSAHS 
HPMGEEIFVL AGTFSDEDGD YPQGTYIRNP PSSSHRPFST AGCTLFVKLN QFDPNDTERV
RIDTRALPWQ AGIGGLKVMS LHDFEGQHTA LVKWPADEVF QSHRHFGGEE ILVLSGQFED
EHGQYPTHTW IRSPHLSEHH PFVKQETVIF VKVGHLPI