| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1362 |
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| Symbol | |
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| ID | 5610798 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1617225 |
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| End bp | 1617881 |
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| Gene Length | 657 bp |
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| Protein Length | 218 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640932227 |
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| Product | anti-ECFsigma factor, ChrR |
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| Protein accession | YP_001473101 |
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| Protein GI | 157374501 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3806] Anti-sigma factor |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCATC TCAATCTGGA TTTTTCTAAA AGAGTCGTGC TCGACTCAAA CACCTTAGAT
TGGCTTCCCA GCCCACTCGA AGGTGTCACC CGCAAGCCTC TGGCGAGGGA GAACCTGGAG
AGTGGCCATG CCACCAGCAT AGTTCGTTAT CAGGCGGGTT CGCATTTCAG TGCTCATAGC
CACCCAATGG GTGAGGAGAT ATTTGTCTTA GCAGGCACCT TTTCCGATGA AGATGGTGAT
TATCCCCAAG GCACCTATAT CCGTAATCCA CCTAGCAGCT CTCATCGTCC TTTCAGCACG
GCTGGCTGCA CCTTATTCGT CAAACTAAAT CAGTTTGACC CTAACGATAC AGAGCGAGTG
CGTATCGATA CCCGTGCCCT GCCATGGCAA GCAGGAATTG GCGGACTTAA AGTCATGTCA
CTGCATGATT TTGAGGGGCA ACATACCGCA TTAGTCAAAT GGCCTGCCGA TGAGGTTTTT
CAGTCTCACC GACATTTTGG TGGCGAAGAG ATATTGGTGC TGTCAGGGCA GTTTGAAGAT
GAGCACGGCC AGTACCCGAC ACACACCTGG ATCCGTAGTC CGCACCTGAG TGAGCATCAT
CCTTTTGTGA AACAGGAGAC GGTCATTTTC GTTAAAGTGG GGCATCTGCC GATTTAA
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| Protein sequence | MQHLNLDFSK RVVLDSNTLD WLPSPLEGVT RKPLARENLE SGHATSIVRY QAGSHFSAHS
HPMGEEIFVL AGTFSDEDGD YPQGTYIRNP PSSSHRPFST AGCTLFVKLN QFDPNDTERV
RIDTRALPWQ AGIGGLKVMS LHDFEGQHTA LVKWPADEVF QSHRHFGGEE ILVLSGQFED
EHGQYPTHTW IRSPHLSEHH PFVKQETVIF VKVGHLPI
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