Gene Ssed_1352 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1352 
Symbol 
ID5611395 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1607482 
End bp1608396 
Gene Length915 bp 
Protein Length304 aa 
Translation table11 
GC content49% 
IMG OID640932217 
Productindigoidine synthase A family protein 
Protein accessionYP_001473091 
Protein GI157374491 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG2313] Uncharacterized enzyme involved in pigment biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.866108 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTAGAGC AGTACCTAGA TATTAATCCA GAAGTCGCCG CGGCAATTGC AGCAGGAAAG 
CCAGTTGTTG CACTGGAATC TACGATTATT TCACACGGAA TGCCTTATCC GCAAAACGTG
GAAACGGCCC TGAAGGTTGA GCAGATTATT CGTGATAATG GCGCGATCCC TGCGACGATA
GCCATCTTGA AGGGACGATT GAAAGTGGGC ATGACTCATG AAGAGATCGA ATATTTAGGT
AAGGCAGGTT TAGATGTCAT TAAGACCAGT CGCCGCGATA TCCCCTTTAT TGTCGCTAAG
CAGGTAGATG GTGCGACTAC AGTGGCCTCG ACCATGATTT TGGCGCAGAT GGCGGGTATC
AAGGTATTTG CTACAGGCGG TATCGGTGGT GTTCACCGTG GTGCACAACA GACATTTGAT
ATCTCGGCCG ATCTTCAAGA GTTAGCTAAT ACCGATGTGG CGGTTATCTG TGCAGGTGCT
AAATCTATTT TGGATATCGG CCTGACTCTG GAGTATCTGG AGACTCAGGG CGTGCCGGTT
ATCGGTCATC AAACTGATAC TCTGCCCGCT TTCTATACCC GTGAAAGCGA GTTTGGTGTC
GACTACAGAC TGGATACCGC CGAGCAGATC GCGACGGCGA TGAAAGCCAA GTGGGAGATG
GGATTAAAAG GTGGCGTTGT CGTTGCAAAC CCAATACCGG AAGAGTATCA GCTTGATCGC
GCCATGATCG ATGAGGTGAT CATCAATGCC GTTGCCGAGA TGGACAGCAA AGGGATATCG
GGTAAAGAGT CGACACCTTT CTTACTGGCT AAAGTTGCAG AAAAAACAGA AGGCACCAGC
CTGAAAGCCA ACATCGAGCT TGTGTTTAAC AACGCCAAGT TGGCGGCCGG AATTGCTGTT
GAGTATGCGA AGTAA
 
Protein sequence
MLEQYLDINP EVAAAIAAGK PVVALESTII SHGMPYPQNV ETALKVEQII RDNGAIPATI 
AILKGRLKVG MTHEEIEYLG KAGLDVIKTS RRDIPFIVAK QVDGATTVAS TMILAQMAGI
KVFATGGIGG VHRGAQQTFD ISADLQELAN TDVAVICAGA KSILDIGLTL EYLETQGVPV
IGHQTDTLPA FYTRESEFGV DYRLDTAEQI ATAMKAKWEM GLKGGVVVAN PIPEEYQLDR
AMIDEVIINA VAEMDSKGIS GKESTPFLLA KVAEKTEGTS LKANIELVFN NAKLAAGIAV
EYAK