| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1349 |
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| Symbol | |
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| ID | 5611392 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1604797 |
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| End bp | 1605375 |
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| Gene Length | 579 bp |
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| Protein Length | 192 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932214 |
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| Product | putative PhnA protein |
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| Protein accession | YP_001473088 |
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| Protein GI | 157374488 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG2824] Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism |
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| TIGRFAM ID | [TIGR00686] alkylphosphonate utilization operon protein PhnA |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0534452 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACTAAAG AACTATTAAG CCGCTGTGGT GGCAAGTGTG AATTATGTGG TAGCGAATCA
AACTTAGCTG CCTTTGAGCT GCCAGAGTCT AAGGGTTACG GTGATGCGCG AATCATGATT
TGTGACACTT GTACTGGTCA GATCAAAACT CCTGCAACTA TCGATATGAA CCACTGGCGT
TGTCTCAACG ACAGCATGTG GAGTCAGGTG CCAGCCGTTC AAGTCATGGC TTACCGTATG
TTAAAGCAGA TCAGTGCTGA AGCATGGGCG CGCGATCTGC TTGATATGCT TTATCTCGAT
GAAGATATGC AAGCGTGGGC TGAAGCGGGA ATCGAAGAGG TCGATGAAGA TTTTGTACCT
CACAAAGACA GTAATGGCGC AATCTTAGAG GCGGGTGATA ACGTCGTTAT CATTAAAGAT
CTTAACGTTA AGGGCACTAC CTTTACCGCT AAGCGCGGCA CAACCGTTCG CGGTATCTCT
TTGACGAATA ACCCTGAGCA TATCGAAGGT CGTGTAAACG GTACTCGTAT CGTTATCTTG
ACCTGCTTCG TTAAGAAGGT TATGCCAAGC GAAGAGTAA
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| Protein sequence | MTKELLSRCG GKCELCGSES NLAAFELPES KGYGDARIMI CDTCTGQIKT PATIDMNHWR
CLNDSMWSQV PAVQVMAYRM LKQISAEAWA RDLLDMLYLD EDMQAWAEAG IEEVDEDFVP
HKDSNGAILE AGDNVVIIKD LNVKGTTFTA KRGTTVRGIS LTNNPEHIEG RVNGTRIVIL
TCFVKKVMPS EE
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