| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1320 |
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| Symbol | |
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| ID | 5610351 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1571449 |
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| End bp | 1571745 |
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| Gene Length | 297 bp |
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| Protein Length | 98 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640932185 |
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| Product | sodium pump decarboxylase, gamma subunit |
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| Protein accession | YP_001473059 |
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| Protein GI | 157374459 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG3630] Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit |
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| TIGRFAM ID | [TIGR01195] sodium pump decarboxylases, gamma subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.219843 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0088654 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGGTGGTGC TATATATTCA TTGTTGGAGT AACTTTGATA CAGAGGGTGA TATGGATTCG
ATATCTGAAC AAATTATTGA AGCACTTGGC ATCATGCTTT TAGGGATGGG GCTGGTTTTC
GTGTTTCTAA CCGTGCTGAT CTTAGGAATT AAGTTGGTGG CTTACAAATT TGCCCCACAG
CCGATCGAAC ATAAAGCACC AGCTGAAAAG AGCGATACAG CTTCCGCACA GGGCGTCGAT
CCCCTGATGG TTGCGGTTAT CACTTCAGCC ATTCACCAAT ATCGTGCAAA AGCATAA
|
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| Protein sequence | MVVLYIHCWS NFDTEGDMDS ISEQIIEALG IMLLGMGLVF VFLTVLILGI KLVAYKFAPQ
PIEHKAPAEK SDTASAQGVD PLMVAVITSA IHQYRAKA
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