| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1294 |
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| Symbol | |
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| ID | 5613563 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1536606 |
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| End bp | 1537676 |
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| Gene Length | 1071 bp |
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| Protein Length | 356 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932147 |
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| Product | pseudouridylate synthase |
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| Protein accession | YP_001473033 |
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| Protein GI | 157374433 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.918905 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000000169172 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATTGAAC TTCATTACTT ACACGGTAAA CCTGTTTCTA AAGCAGACCT ACGTACACAT
AACAGCGATT TTATTGTGCA GGAGATATTA CCCTTTGCGC CGACGGGGGA AGGTGAACAT
CATCTGCTTC ATATTCGCAA AGATGGCCTG AACACCGCTG ATGTGGCAAA AATTCTGTCG
GGTTTCGCTC ATGTTCATCC TAAAGAGGTG ACCTATGCCG GTCAGAAAGA TAAAAATGCG
ATCACCGAGC AGTGGTTTGG CGTTCGTATT CCCGGTAAGG ATACGCCGGA TTGGGCGAGT
CTCAACAGCG AACAGCTAAC CGTCCTTTCG AGCAGCCGAC ACGGTAAGAA GTTACGTATC
GGCGCATTGG CCGGGAATCG CTTCACTCTG ACACTGCGTC AGGTTTCAGA TATGGAAGAT
GTGATTGCCA GAATTGAAAA GATCAAACAG ACCGGCGTGC CTAACTACTT TGGTGAGCAG
AGGTTTGGTC ATGATGGCAA AAACTTGATC TTTGGTCGTC AGATGTTTGC CGGACGTAAA
GTTAAAGATA GAAAAAAAAG CAGTATGTAT CTATCTGCCG TGCGCTCCTA CCTGTTTAAC
CTGGTTGTGT CGGCAAGACT CTGTGAACAT GGGTTAGCCA GACTCGATGG TGATAGCGTT
ATGCTGGCAG GGAGTAAAAG CTATTTCGTC GCAGAACAAT GGGATGAAAC GCTACTGAAT
CGTCTTGCTG AGAAAGATAT TCAACTGTCG GCTCCAATGT GGGGAAGAGG GGCTGCTTTA
CCTCAAGGGG AGGCGGCTGA ATTTGAATCT AAGGTACTGG CCGAACTTGA ACAAGATCGT
GACGGTCTGG AACACGCAGG CTTGAGTCAG GAGCGACGCC CCTTGTTATT AGAGCCGCAA
CATTTCAGCT ATCAACAAGA GGGCGACGAT GTCTTAGTCA TCAAATTTGC CCTGCCTGCC
GGGAGCTTTG CGACTTCAGT ACTAAGAGAG TTGTTTGACT ATGAAGATGT CAACGACCGC
GAGTTTCGAT TGCGCCAGCA AGCAAGACAA GAGGAATCAA TGCTTAAATA A
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| Protein sequence | MIELHYLHGK PVSKADLRTH NSDFIVQEIL PFAPTGEGEH HLLHIRKDGL NTADVAKILS
GFAHVHPKEV TYAGQKDKNA ITEQWFGVRI PGKDTPDWAS LNSEQLTVLS SSRHGKKLRI
GALAGNRFTL TLRQVSDMED VIARIEKIKQ TGVPNYFGEQ RFGHDGKNLI FGRQMFAGRK
VKDRKKSSMY LSAVRSYLFN LVVSARLCEH GLARLDGDSV MLAGSKSYFV AEQWDETLLN
RLAEKDIQLS APMWGRGAAL PQGEAAEFES KVLAELEQDR DGLEHAGLSQ ERRPLLLEPQ
HFSYQQEGDD VLVIKFALPA GSFATSVLRE LFDYEDVNDR EFRLRQQARQ EESMLK
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