| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1242 |
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| Symbol | |
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| ID | 5611567 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1473960 |
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| End bp | 1474838 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932095 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001472981 |
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| Protein GI | 157374381 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.310475 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTACCA TTGAACAGCT CATCTCATTC GTCACTACCG TTGAATCAGG CTCATTCTCT
GCGGCGGCTA GAAAATTAGG TAAAGTACAA TCTGCGGTCA GTCAAAATAT TATGAATATG
GAGATAGACA CTGACCTGTA CTTATTTGAT CGAAGCGGGC GTTACCCAAA ACTAACTAAA
GCCGGAGAGA AACTTCTGCC TCAGGCGAAA GCGGTCATAG CGCAACATAG ACGATTGGAT
CAACAGGTAA AAGCATTGGA GTCGGATGAG GAGCTAAAGC TGACTTTAGC TATCGATGAA
GGGATCCCCT ATTCCGGACT GATCGATCTC TTGCCTCAGT TAGAAGCGCA GCATCCCCAA
CTTCAGTTAG AGTTTCTCTG TGCATCGAGC CAGGACGTTA TTCAATTAGT GGCCGATAAG
AGAGCCACTT CCGGTTTGGT ATTCAGTGAT AATGTGTATC CTGAAATGAT CGATTTCGAA
ACCTTGGGCA CGGTTCAATT TGAATTGTTA GTGAGCCCAA AACATGTTCT GGCACAAACA
GATGCCGCCC ATGTCGATAT TCTTATGCTG CATAGACAGC TGGTTATCGG CTCCCAGGGC
TCAAAAGTCA CCTGGTTTAA CCAAGCCCAC TCTCCCGATG TCTGGTATGC AGATAACTAC
TATGTATTGC TTGAATTGGC AAAGTCAGGG TTTGGCTGGA CACTGCTTCC ACTGCATTTA
GCGGAAGATG CCATTAACAA AAAACAGCTC TGTAAAGTTC CGGTACAATT CGAGCAGCTT
GGTTGGCAGG CAAATGTGGA CGTTATTCAA CATACTGCCA TGGAAACCTC GGCTAACCGC
TCTCTTAGAA AGCTATTAAG AAGGCTACTT CAGATGTGA
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| Protein sequence | MSTIEQLISF VTTVESGSFS AAARKLGKVQ SAVSQNIMNM EIDTDLYLFD RSGRYPKLTK
AGEKLLPQAK AVIAQHRRLD QQVKALESDE ELKLTLAIDE GIPYSGLIDL LPQLEAQHPQ
LQLEFLCASS QDVIQLVADK RATSGLVFSD NVYPEMIDFE TLGTVQFELL VSPKHVLAQT
DAAHVDILML HRQLVIGSQG SKVTWFNQAH SPDVWYADNY YVLLELAKSG FGWTLLPLHL
AEDAINKKQL CKVPVQFEQL GWQANVDVIQ HTAMETSANR SLRKLLRRLL QM
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