Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1200 |
Symbol | |
ID | 5612629 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1427523 |
End bp | 1427957 |
Gene Length | 435 bp |
Protein Length | 144 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640932049 |
Product | type IV pilus assembly protein PilX |
Protein accession | YP_001472939 |
Protein GI | 157374339 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00971414 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAC AGAAAGGTAT TGCACTATTT TTTTCTTTGA TTGTACTTGT CATCATGACC GTGATTGGTA TTGCTTTAGC CGTAAACTCT AATCAATCGA TGAGAATGGC TGGCGCAGGT TCAGAGAGGC TTGAAGCGAA GGCGGTTGCC GATGGCGGGC TCACTCAGGT GATTTTTGAT AATGCGGGAG CTTCTTTCGC CAGCCTTGCA GTCGAAACTA CCGCGACTGC TTTTGGAAGC AATCAAGTAA TCACTCCATT GCCGGAGACT GGCGTTAGAG ATGTAGGTTG TCAGAGAACA TCAAATGCCA CTGGCGCAAA TTTAGTGAGT TGTAGGCGAG TGCAAATAAC GAGTACGGTG GCATTTGGTA GAGATGATTT AGGTTCGCTT ACCGTTGCTT CGGGTGTAGA GCAGCAAGTG CTGACAGGAA ATTAA
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Protein sequence | MKKQKGIALF FSLIVLVIMT VIGIALAVNS NQSMRMAGAG SERLEAKAVA DGGLTQVIFD NAGASFASLA VETTATAFGS NQVITPLPET GVRDVGCQRT SNATGANLVS CRRVQITSTV AFGRDDLGSL TVASGVEQQV LTGN
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