Gene Ssed_1200 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1200 
Symbol 
ID5612629 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1427523 
End bp1427957 
Gene Length435 bp 
Protein Length144 aa 
Translation table11 
GC content46% 
IMG OID640932049 
Producttype IV pilus assembly protein PilX 
Protein accessionYP_001472939 
Protein GI157374339 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00971414 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAAC AGAAAGGTAT TGCACTATTT TTTTCTTTGA TTGTACTTGT CATCATGACC 
GTGATTGGTA TTGCTTTAGC CGTAAACTCT AATCAATCGA TGAGAATGGC TGGCGCAGGT
TCAGAGAGGC TTGAAGCGAA GGCGGTTGCC GATGGCGGGC TCACTCAGGT GATTTTTGAT
AATGCGGGAG CTTCTTTCGC CAGCCTTGCA GTCGAAACTA CCGCGACTGC TTTTGGAAGC
AATCAAGTAA TCACTCCATT GCCGGAGACT GGCGTTAGAG ATGTAGGTTG TCAGAGAACA
TCAAATGCCA CTGGCGCAAA TTTAGTGAGT TGTAGGCGAG TGCAAATAAC GAGTACGGTG
GCATTTGGTA GAGATGATTT AGGTTCGCTT ACCGTTGCTT CGGGTGTAGA GCAGCAAGTG
CTGACAGGAA ATTAA
 
Protein sequence
MKKQKGIALF FSLIVLVIMT VIGIALAVNS NQSMRMAGAG SERLEAKAVA DGGLTQVIFD 
NAGASFASLA VETTATAFGS NQVITPLPET GVRDVGCQRT SNATGANLVS CRRVQITSTV
AFGRDDLGSL TVASGVEQQV LTGN