Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1188 |
Symbol | |
ID | 5612693 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1414875 |
End bp | 1415648 |
Gene Length | 774 bp |
Protein Length | 257 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640932037 |
Product | hypothetical protein |
Protein accession | YP_001472927 |
Protein GI | 157374327 |
COG category | [S] Function unknown |
COG ID | [COG3022] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.854 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTAGTTT TAGTTTCACC AGCGAAAACA TTAGATTATG AAAATAAAGC AGGCACAATC GAGCATACTT TACCTAAATT GGTTCAACAT AGTGAACAGC TTATCGAAGA GTGCCGTAAG CTCGCGCCAT CTGATATTGC ATCATTAATG AAGGTAAGCG ATAAAATTGC CGGTTTAAAT GCGGCACGAT TTACAAGTTG GAGCCGGGAT TTTTCTACTG ACAATGCCAA ACAAGCCCTT TATGCATTTC GTGGTGATGT CTATACGGGC TTAGATGCTG ACACGCTATC TCAGCAGAGT ATTGAGCGTG CACAGAAACA CCTCAGAATT CTCTCAGGTT TATATGGCTT GCTCAGGCCA TTGGATTTGA TGCAGCCATA CCGCCTCGAG ATGGGGACCC GGCTAGCCAA TATTAAAGGG ACTAATCTTT ATCAGTTCTG GGGCGATGTG ATAACCGATG AAGTTAATCT GGCTTTATCG GAGCAGGGCG ACCAGATTGT GGTGAACTTG GCCTCTAACG AGTATTTTAA GGCCGTTAAA CCTAAGTCAC TAAATGGCTC TTTGATTACT CCGATTTTTA AAGATAGAAA AAATGGTCAA TATAAGGTGA TCAGTTTCTT CGCTAAACGC GCCAGAGGCA TGATGGTGAG ATATATTCTG GATAACAATA TTAAAACTTT CTCAGGGCTA ACCGAGTTTG ATGCTGCTGG TTATTACTAC TGTGAAGCCG AGTCGACTGC ACAGGCGCCT GTTTTCAAGC GAGAGGAGCA GTAA
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Protein sequence | MLVLVSPAKT LDYENKAGTI EHTLPKLVQH SEQLIEECRK LAPSDIASLM KVSDKIAGLN AARFTSWSRD FSTDNAKQAL YAFRGDVYTG LDADTLSQQS IERAQKHLRI LSGLYGLLRP LDLMQPYRLE MGTRLANIKG TNLYQFWGDV ITDEVNLALS EQGDQIVVNL ASNEYFKAVK PKSLNGSLIT PIFKDRKNGQ YKVISFFAKR ARGMMVRYIL DNNIKTFSGL TEFDAAGYYY CEAESTAQAP VFKREEQ
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