| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1143 |
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| Symbol | |
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| ID | 5610975 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1363524 |
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| End bp | 1364144 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640931992 |
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| Product | anti sigma-E protein, RseA |
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| Protein accession | YP_001472882 |
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| Protein GI | 157374282 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3073] Negative regulator of sigma E activity |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000468966 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGATAAAT TAGGTCAGGA ATGGGTATCC GCTGCCGTCG ATGGTGAAAT CGATGAGCAG
ATGTTAGCTG AACTTGCAGC TGATAAGGAT TCACATGAGC AGTGGCGTGA TTATCATATG
ATAGGCGACG CGATGCGTGG AGAGTTACCT AAGACTATAC ACTTAGACCT TTCTGCTAAC
ATTGCTGCGG CAATCGAAAA TGAACCCACA ATCATTGCAC CCGTTAAGCG TGAAACGCCT
AATGAGGTAA AAGTTAAAAC GACGGGACTG AGTAATGTCA TCCCTATGTT TAAACAATTT
GGTCAGTATG CTATCGCTGC AAGCGTGGCT TTAGTGGCGG TTGTCGGTGT TCAAAATTAC
AGCCAACAAG AGAATGCAAT CGATGCATCC CCTCTACCAG TGCTTAACAC TCGTCCACTC
GTTGGCAGTG TTACACCAGT GAGCCTGCAA ACTGGCCCGG TTCAGCAGAA TCAAAGTTTC
ACCAACGATC AGGTTATGGA GCAGCGTCAG CGCATTAATG CTTATATTCA GGATCACATG
CTGCAACAAA GATTGAATAA TGGGGTGCAA ATAGACGACA ATAGCCATAG TGAATTAGAT
TCAATACCTG TGAATCATTA A
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| Protein sequence | MDKLGQEWVS AAVDGEIDEQ MLAELAADKD SHEQWRDYHM IGDAMRGELP KTIHLDLSAN
IAAAIENEPT IIAPVKRETP NEVKVKTTGL SNVIPMFKQF GQYAIAASVA LVAVVGVQNY
SQQENAIDAS PLPVLNTRPL VGSVTPVSLQ TGPVQQNQSF TNDQVMEQRQ RINAYIQDHM
LQQRLNNGVQ IDDNSHSELD SIPVNH
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