| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1072 |
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| Symbol | |
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| ID | 5610993 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1273107 |
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| End bp | 1274945 |
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| Gene Length | 1839 bp |
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| Protein Length | 612 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931921 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001472811 |
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| Protein GI | 157374211 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.321598 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATATCTA TGGAGCACAC TCCTCAGTCG CAACTTAAAT TGTTGCTAGC CAAAGGTAAA
GAGCAAGGTT ACTTAACCTA TGCAGAAGTG AACGATCACT TGCCTGCAGA TATGGTCGAT
GCCGACCAGA TCGAAGATAT TGTCCAGATG ATTAATGACA TGGGTATTCG CGTCTACGAA
CAGGCGCCGG ATGCTGATGA AATCATGATG TCTGAAGACA GCACCGATGA AGATGCTGCC
GAAGAAGCTG CCGCTGCACT TGCCACGGTA GAAGCCGAAT TAGGCCGTAC AACTGACCCG
GTTCGTATGT ATATGCGTGA AATGGGTACC GTTGAACTTC TTACCCGTGA AGGCGAAATT
GTTATCGCCA AGCGTATCGA AGAGGGGATC AACACGGTTC AAGCCTCGGT TGCCGAGTAT
CCACAAGCGA TCTCTATGAT CCTTGAGCAG TTCGACCGTT ATGAAGCTGA AGAAGTAAGA
TTGTCAGATA TCATCTCAGG TTTTGTCGAT CCTAATGCCG ATGATGTAGC CCCCACGGCA
ACTCACGTCG GTTCTGAACT CTCAGATGAA GAGTTAGATG ATGAAGACGA TGAAGAAGAT
GATGATGAAG AAGAGGAAGG CCCGAAAGGT CCCGATCCTG AAGAAGCTAA AGAACGCTTC
ACTCAGCTAA GAGAAGTACA TGAAAATACG CTGAAGGTCA TCGCTCTTAA GGGACGCGGC
CATCCAGAGT CTACCTTAGC GCTATTCGAA ATTGGCGAGC TCTTTAAAGA GTTCCGCCTA
ATGCCTAAGC AGTTCGACCG CTTAGTCAAA AACATGCGCG CTATGATGGA CAAGGTACGT
GTTCAAGAGC GTCTCATCAT GAAGCTTTGT GTTGAACAAG CTAAGATGCC AAAGAAAAAT
TTCGTTAAGG TATATACCAG TAACGAGAGT AGCATCGAAT GGTTTAACGA AGAACTCGCC
TCTAAGAAGC CTTACGTCGA AGGTTTAGAG ATGGTTGATC CGGATGTTCG CCGTTGTCGC
GCAAAACTTG ATGCGATTGA AAAAGAAACC GGTCTTGCGA TCGCTTCTAT CAAAGATATT
AACCGTCGTA TGTCAATCGG TGAAGCTAAG GCTCGTCGTG CGAAGAAAGA GATGGTTGAA
GCTAACTTAC GTCTGGTTAT CTCCATCGCT AAGAAATACA CCAACCGTGG TCTACAGTTC
CTGGATCTTA TTCAGGAAGG TAACATCGGC TTGATGAAAG CGGTTGATAA GTTTGAATAC
CGTCGTGGTT ATAAATTCTC GACCTATGCA ACTTGGTGGA TCCGTCAGGC GATCACTCGC
TCAATTGCCG ATCAGGCAAG AACAATCCGT ATTCCGGTAC ATATGATTGA GACTATCAAC
AAGCTGAACC GTATCTCACG TCAAATGCTA CAGGAGATGG GTCGCGAACC TTCACCTGAA
GAGCTGGCTG AGCGTATGCT GATGCCTGAA GATAAGATCC GTAAGGTATT GAAGATTGCC
AAAGAGCCTA TCTCCATGGA GACGCCGATT GGTGATGATG AAGATTCGCA CTTAGGTGAT
TTCATCGAGG ATACAACCCT CGAGCTACCA TTGGATTCGG CGACAGGCGA AAGCTTAAAG
AACGCGACTC ACGAAGTACT TGCTGGCCTA ACAGCCCGTG AAGCAAAAGT ACTGCGTATG
CGTTTCGGTA TCGATATGAA CACTGACCAC ACTCTTGAAG AGGTTGGTAA GCAGTTCGAC
GTTACCCGTG AGCGTATTCG TCAGATCGAA GCGAAGGCAC TGCGTAAATT ACGCCACCCT
TCACGCTCAG AGATATTGAA GTCCTTCCTG GACGAGTAA
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| Protein sequence | MISMEHTPQS QLKLLLAKGK EQGYLTYAEV NDHLPADMVD ADQIEDIVQM INDMGIRVYE
QAPDADEIMM SEDSTDEDAA EEAAAALATV EAELGRTTDP VRMYMREMGT VELLTREGEI
VIAKRIEEGI NTVQASVAEY PQAISMILEQ FDRYEAEEVR LSDIISGFVD PNADDVAPTA
THVGSELSDE ELDDEDDEED DDEEEEGPKG PDPEEAKERF TQLREVHENT LKVIALKGRG
HPESTLALFE IGELFKEFRL MPKQFDRLVK NMRAMMDKVR VQERLIMKLC VEQAKMPKKN
FVKVYTSNES SIEWFNEELA SKKPYVEGLE MVDPDVRRCR AKLDAIEKET GLAIASIKDI
NRRMSIGEAK ARRAKKEMVE ANLRLVISIA KKYTNRGLQF LDLIQEGNIG LMKAVDKFEY
RRGYKFSTYA TWWIRQAITR SIADQARTIR IPVHMIETIN KLNRISRQML QEMGREPSPE
ELAERMLMPE DKIRKVLKIA KEPISMETPI GDDEDSHLGD FIEDTTLELP LDSATGESLK
NATHEVLAGL TAREAKVLRM RFGIDMNTDH TLEEVGKQFD VTRERIRQIE AKALRKLRHP
SRSEILKSFL DE
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