| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1067 |
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| Symbol | |
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| ID | 5613040 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1265710 |
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| End bp | 1267503 |
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| Gene Length | 1794 bp |
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| Protein Length | 597 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931915 |
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| Product | putative glutamate synthase (NADPH) |
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| Protein accession | YP_001472806 |
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| Protein GI | 157374206 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAAAAAA CAGATACTTC CCACTACCGA CACTTTCTCA AAGTGGTTGA CTGCCAACAA
GCCTGCCCTG CCCACACGCC GGTGCCCGAA TATATTCGTC TGATTGCCGA CAGAAAATAC
ACTCAAGCCT ATATGCTCAA CTGGGAATCA AATGTCTTTC CCGGTATTTT GGGACGGGTC
TGTGACCGTC CCTGTGAGCC TGCATGTCGT CGGGGACGTG TCGAAGACGA TCCGGTGGCT
ATCTGCCGTT TGAAGCGTGT CGCGGCAGAT TATAAGGGGG AGATACAAGC TCTGTTGCCG
GAGATCCCCC GAACGAAGAA CGGTAAACAT ATCGCCCTGA TCGGTGCCGG TCCCGCCTCA
CTAACGGTCG CCCGGGATCT ACTGCCGCTG GGTTACAAGA TCACACTATT CGAACGTGAT
CTCCAGGCTG GTGGCATGAT GCGAAGCCAA ATTCCGGCGT TTCGCCTACC GGAAGCCGTT
CTCGATGAAG AGCTGGATTT GATTCTGCAA ATGGGACTCA AGGTTCGCTT TGGCGTTGCC
ATAGATAGCA TGAAATCCAT GCTTGAGGAG ATATTTGATG TGGTCTTTGT GGGGACCGGG
GCGCCGAAAG GTCGGGATGT CAGAATCCCG GGTCGCCAGG AGGCAAAGGA GCATCTGACT
CTGGGGATTG ACTGGTTAGC CAGCGTTGCC TTTGGCCACA CCCGTAGTAT CGGCGAGCGG
GTTATTGTTC TGGGGGGAGG TAATACAGCC ATGGACTGCT GTAGAACCGC TAAACGCCTG
GGGGGCAAAC AGGTAAAGGT GGTGGTACGT TCGACTTTTG ATGCGATGAA GGCTTCTCCC
TGGGAGAAAA GCGATGCCGG CGAGGAAGGA ATAGAGATAA TCCCAAATCA CACGCCCATA
GAGTTCGTCA TGGAAGCGGG GGAGTTTAAG GGCGTGCTAT TCGAGGAACT TAACTCCAGT
TATGACGAGA AGGGGAAGCG TACGCTGACT CCAACGGGCA ATACTGTGAT GATGGAGTGC
GATGATGTCT TGATCGCAAT AGGACAGGAT ACCGCCTTCC CCTGGATAGA GCGTGATATT
GGAATTGAAT TCAATGAATG GCAACAGCCG GTGCTCGATG AGGCTTCATT GCAATCGAGC
TTACCTACGG TCTTTTTTGG TGGCGATGCC GCCTTTGGCC CAAAAAATAT CATTACCGCA
GTGGCTCACG GACACAAGGC TGCCATCTCA ATCGACCTGC TATGTCATGG TAAAGATCCT
GTCTTAGAAA GACCTGTCAG TGATTTCAAC CTTGTCAGTC AGAAGATGGG TATTCATGAA
TGGAGTTATC ACAATAAGAT AAAGCTGGAT TCACGCTATC CGGTGCCGCG TCTCGATTGG
CAGGAGGCGA TAGAGAAACT GACGAGTGAG GTCGAATTAG GCTATGACGA GAAGCTTGCT
CTTGACGAAG CCCACCGTTG TTTTAACTGC GATGTTCATA CCATCTTCAG TGAAGATATC
TGTATCGAAT GCTCCGCCTG TGAAGATGTC TGCCCGGTGG ACTGCATTAA CTTTATCCCG
GCTCACGCAG AGGATACAGA GGTAAGAGAC CCCATAGTCG TGAACAGGCT CAGGGTCAGT
GATATTAACC CTGAGCAGGA ACTTTTTGTG TCAGCCCCAC TGAAGACGGG CCATCTGATG
ATCAAGGATG AAGATGTGTG TCTTCATTGT GGATTGTGTG CAGAGCGCTG TCCTACTGGA
GCCTGGGACA TGAAAAAATT CATATTAAAC AATGTAAAGG CAGCGATCGA ATGA
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| Protein sequence | MKKTDTSHYR HFLKVVDCQQ ACPAHTPVPE YIRLIADRKY TQAYMLNWES NVFPGILGRV
CDRPCEPACR RGRVEDDPVA ICRLKRVAAD YKGEIQALLP EIPRTKNGKH IALIGAGPAS
LTVARDLLPL GYKITLFERD LQAGGMMRSQ IPAFRLPEAV LDEELDLILQ MGLKVRFGVA
IDSMKSMLEE IFDVVFVGTG APKGRDVRIP GRQEAKEHLT LGIDWLASVA FGHTRSIGER
VIVLGGGNTA MDCCRTAKRL GGKQVKVVVR STFDAMKASP WEKSDAGEEG IEIIPNHTPI
EFVMEAGEFK GVLFEELNSS YDEKGKRTLT PTGNTVMMEC DDVLIAIGQD TAFPWIERDI
GIEFNEWQQP VLDEASLQSS LPTVFFGGDA AFGPKNIITA VAHGHKAAIS IDLLCHGKDP
VLERPVSDFN LVSQKMGIHE WSYHNKIKLD SRYPVPRLDW QEAIEKLTSE VELGYDEKLA
LDEAHRCFNC DVHTIFSEDI CIECSACEDV CPVDCINFIP AHAEDTEVRD PIVVNRLRVS
DINPEQELFV SAPLKTGHLM IKDEDVCLHC GLCAERCPTG AWDMKKFILN NVKAAIE
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