| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1043 |
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| Symbol | |
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| ID | 5610174 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1237318 |
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| End bp | 1238808 |
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| Gene Length | 1491 bp |
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| Protein Length | 496 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640931891 |
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| Product | methylmalonate-semialdehyde dehydrogenase |
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| Protein accession | YP_001472782 |
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| Protein GI | 157374182 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
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| TIGRFAM ID | [TIGR01722] methylmalonic acid semialdehyde dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0205992 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.342071 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGACGA TCACCCATTT CATTAACGGC AGCCATACTG ACACAAGCGA GCGCACGGGT
CAGGTTTTCG AACCCGCCAC CGGAGAGCAA ACAGCATCGG TATCCTTGGC CAGTGCGGCC
GAAGTTGCCG GCGCTATCGA GTTAGCCAAG AGAGCACATA AGAGCTGGTC TCAGATCTCA
CCACTCAATC GCGCCAGAGT CCTGTTTAAG TTCAAGGCGC TGGTCGAAAA CAATATCGAT
GAGTTAGCAG AGCTTATCAC CCGGGAACAC GGCAAGGTAT TAGATGATGC CAAGGGCGAG
ATCATTCGAG GCCTGGAGGT CGTTGAGTTT GCGTGCGGCA TTCCACATCT GCTTAAAGGC
GAGCACACCG AGCAGGTAGG CACCGGCGTC GATGCCTGGC ATGTGAATCA ATCGCTCGGC
GTCGTGGCCG GTATTGCTCC GTTCAACTTC CCGGTCATGG TTCCCATGTG GATGTTCCCA
ATCGCGATTG CCAGTGGTAA CACCTTTATC ATGAAGCCAT CGGAGAAAGA TCCGAGCTCT
GTGATGCGCC TGGCCGAACT GCTTAGTGAA GCGGGTCTGC CCGATGGTGT GTTCAATGTC
GTAAACGGTG ATAAAGAGGC GGTCGATACC CTGCTGACCC ATAAAGATAT TCAAGCCGTG
AGTTTCGTTG GCTCAACCCC TATCGCCGAA TATATCTATG AGACGGCATC TAAATACGGT
AAACGTGTAC AGGCACTGGG TGGCGCGAAA AACCATATGT TACTCATGCC CGATGCCGAC
TTAGATCAAG CCGTTGGCGC CTTGATGGGC GCAGCCTATG GTTCAGCCGG CGAGCGTTGC
ATGGCGATAT CTGTGGTACT GGCGGTAGGC AACTCCGGCG ATGCACTGGT TGAAAAACTG
CTGCCACAGA TTAAAGCATT GCGCGTGGGT AACGGAGTCA CTCCCGAGAT GGACATGGGG
CCTTTGATCT CCGCGCAGCA TCTGGCCAAG GTCACCGACT ATGTCGAAAC CGGCGTGGCA
GAAGGTGCCA CCCTCCTCGC CGATGGCCGG GAGTTAACGG TTGCAGATCA CGAGCAGGGC
TATTTTCTCG GTGGCTGCCT GTTCGATAAT GTCACCCCTG AGATGACTAT CTACAAGGAG
GAGATCTTCG GTCCGGTGCT GGCCATCGTC AGAGTCGATG ATTACGCCGA AGCGCTCGAA
CTCATTAACG AACATGAATT TGGCAATGGC ACCGCCATCT TTACTCAAAG CGGCGAGGCG
GCGAGACATT TCTGTCATCA CGTTCAGATT GGTATGGTCG GCGTTAACGT GCCGATCCCC
GTTCCTATGG CTTTCCATAG CTTCGGTGGA TGGAAGCGTT CACTGTTTGG TCCGCTACAT
ATGCATGGGC CCGACGGTGT TCGCTTCTAT ACCAAGCGTA AGGCTATTAC TGCCCGCTGG
CCAAAACCAA AGCATGCTCA GGCTGAGTTT GTCATGCCAA CGATGAAGTA A
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| Protein sequence | MQTITHFING SHTDTSERTG QVFEPATGEQ TASVSLASAA EVAGAIELAK RAHKSWSQIS
PLNRARVLFK FKALVENNID ELAELITREH GKVLDDAKGE IIRGLEVVEF ACGIPHLLKG
EHTEQVGTGV DAWHVNQSLG VVAGIAPFNF PVMVPMWMFP IAIASGNTFI MKPSEKDPSS
VMRLAELLSE AGLPDGVFNV VNGDKEAVDT LLTHKDIQAV SFVGSTPIAE YIYETASKYG
KRVQALGGAK NHMLLMPDAD LDQAVGALMG AAYGSAGERC MAISVVLAVG NSGDALVEKL
LPQIKALRVG NGVTPEMDMG PLISAQHLAK VTDYVETGVA EGATLLADGR ELTVADHEQG
YFLGGCLFDN VTPEMTIYKE EIFGPVLAIV RVDDYAEALE LINEHEFGNG TAIFTQSGEA
ARHFCHHVQI GMVGVNVPIP VPMAFHSFGG WKRSLFGPLH MHGPDGVRFY TKRKAITARW
PKPKHAQAEF VMPTMK
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