Gene Ssed_1040 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1040 
Symbol 
ID5612831 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1235745 
End bp1235927 
Gene Length183 bp 
Protein Length60 aa 
Translation table11 
GC content49% 
IMG OID640931888 
Producthypothetical protein 
Protein accessionYP_001472779 
Protein GI157374179 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00942634 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.682604 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATCTAT CGAATGCTGA GCAGTGGGCT CAACTCTGTC ATCGTCAAGC TGAGCTTGTC 
GAAAGTCTCT CAAAAACTTT CCCGGAACGT CGTGAAAATC ATACCGATTT AGGTCTCTGC
TGGCGAAGGC TGGAACAGCA AGTTAGACGT GGCGAGACGC CGCGAGTCGA TGATATAAAG
TAG
 
Protein sequence
MHLSNAEQWA QLCHRQAELV ESLSKTFPER RENHTDLGLC WRRLEQQVRR GETPRVDDIK