| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1025 |
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| Symbol | |
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| ID | 5609838 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1220589 |
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| End bp | 1221785 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931873 |
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| Product | major facilitator transporter |
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| Protein accession | YP_001472764 |
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| Protein GI | 157374164 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0221515 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGTTTA ATGTTTGGGT GCTGACGCTG GCACAAGCGT TTGCCATGAG CGCCGCACCT
ATGATGATGC TACTGGGAGG GATCGTCGGT ATCGAGCTGG CACCGAGTCC GGCCTTAGCG
ACATTGCCTA TCACCTCCAT GGTGGTTGGG GTTGCGATAT CGATATTACC TGTGACTCAA
TTGATGAAGC GTTTCGGTCG TAAAAAAATC TTTATCGGTG GATCACTTTT GGCTGCCATA
GCGGGCCTCA TAGGGGCCTA TGGGATAGGT GAACGTGACT TTACCATTTT CTGTATCAGC
GGTGCATTGC TTGGCACCGC CGGGGCTATC GTTCAACAGT ATCGTTTCGC GGCAATGGAA
GCGGTGGCAC CCGCTTTAGG TGCTAAAGCT GCATCTCGGG TGTTGCTCGG TGGGCTAGTC
GCCGCGTTTC TCGGCCCGGA ACTGGCCCTG TTCGGTAGTG AGTTGGTGGC TACTCCCTAT
GTTGGTGCCT TTCTTTTTCT TACACTGGTT TGCCTATTAG CGGCTTTTAC ATTGATGTTT
TACCGTGAGA CTGCGGCAAT TACCCCCCTT CATTCGGAAC ATACTCATGC AGTCCCCAGG
CCTCTACCGG TTATTTTGAG TCACACTCAA ATCTGGGTGG CGATTGCCGG CGCCATCATA
GGTTTTGCCA TGATGAGCTT CGTGATGACC GCCACCCCCC TGCATATGCA TCATATCGAG
CATCACTCTC TGGCCGACAC TAAATGGGTG ATCCAGAGTC ATATTATTGC CATGTATCTT
CCCTCTCTGT TCACCGGACT GCTGGTGGCG AGGTGGGGGG TATCTAAGAT GATGTTGCTG
GGCTTAACGG CCTATCTGGT GACTATCGTT ATCGCCTTGA TGGGGAACGA GCTTCTTAAC
TATTGGTTGG CACTGGTATT GTTAGGTCTG GGTTGGAACT TGTTGTTCGT TGGCGGAACC
GTGCTTCTAC CCCGTTGTTA TGCTCACGGT GAAGGATTTA AGGTACAGGC GTTGAATGAC
AGTTTAGTCT TCGGTTCTCA AGCGCTCGCC TCCTTGAGTG CCGGATGGGT TATTCATCAA
TTGGGGTGGG AGTTACTGCT GAGTATCTGT CTGCCATTTA TCGCCTTTCA GCTTTTGTTG
ATGACTTGGT GGAAATTTAG TCAAAGCAAT CGCTTGGAGG CTAATGCTAA CAAATAA
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| Protein sequence | MPFNVWVLTL AQAFAMSAAP MMMLLGGIVG IELAPSPALA TLPITSMVVG VAISILPVTQ
LMKRFGRKKI FIGGSLLAAI AGLIGAYGIG ERDFTIFCIS GALLGTAGAI VQQYRFAAME
AVAPALGAKA ASRVLLGGLV AAFLGPELAL FGSELVATPY VGAFLFLTLV CLLAAFTLMF
YRETAAITPL HSEHTHAVPR PLPVILSHTQ IWVAIAGAII GFAMMSFVMT ATPLHMHHIE
HHSLADTKWV IQSHIIAMYL PSLFTGLLVA RWGVSKMMLL GLTAYLVTIV IALMGNELLN
YWLALVLLGL GWNLLFVGGT VLLPRCYAHG EGFKVQALND SLVFGSQALA SLSAGWVIHQ
LGWELLLSIC LPFIAFQLLL MTWWKFSQSN RLEANANK
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