| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0997 |
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| Symbol | |
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| ID | 5610218 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1178674 |
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| End bp | 1179639 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640931845 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001472736 |
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| Protein GI | 157374136 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 54 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTAATC ATACACTTAA GAAGATCAGT GAACTGGACG TATTTTGTTT ATTGGTATTT
AAAATCATTT TTCAAACCGG TCATGCTAAT TCGGCTGCAA AAGAGCTGAA TGTCTCGGCA
CCTAAAATCA GTCGCTGCCT GACCATGTTG CGGACGACGT TTGATGATGA GCTATTTTAT
CGTCGTCAGT TAGGGTTGAA ACCAACCCCG TTAGCCGAGC ACCTTTATGA GCCTATCTGC
CAGTTTTGCG ATTCGGTGGC AAAAATCGAA CAGGTGGCGT TTGAAGTCAA CCATTTTGAT
TCAACCCCCA TTCTCAATAT TGCTGTGACG CCGGGCATCA TGGCGAGTCT CTCTTTAGTG
TTATGCAATA ATGATTCTCT GAAAAGCATA GGTAAGATCC GACTCCATCC GTGGAAGGAT
GACTCTGCCG AGTTGATCCA CAGCGGAGGG CTGGACTTAG GGTTGGCCTT CGATAATTCG
CATCATCTCG ATCTCAATTT CGAACACTTA GGTACCTTAG ATTCAGTTTA TCTGGCAGGA
AATTCCAGAC ATCCCATTTG GGAGCACCTT CCTCATTTGA GCTTAGATGA AATTTGTAAG
CACCCTTTCC TCTATCTGGA AGGTAAGGGA TTCAATGACA AGATAGATCC TCTGGAACTC
TATTGCCGCC AGTCGGGAAT AGAGCTTCTA AGTGTCGAAA AGGTCAAAGG TAAGGAGCAG
TGGTACAGCA ACTTATTAAC CATGGGGAGC CTGGCTTTTG CTCCGGCGGT AGAGGCTGAA
ATTATTAACA ATATGCCCGG GATCCGCATA GAGGAGTTAC CCGAAGCAGA GATGAAGAAA
CTTCACGGCG ATATGATGTC TCCACAATAT TATTTAATAG AGAAACCGAC TTCCCATCGC
CGATACACAG TTGAAAGTCG AGAAATGATA ATCAATATTA TTAAGGGGTT ACTGACCTCT
TCATGA
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| Protein sequence | MTNHTLKKIS ELDVFCLLVF KIIFQTGHAN SAAKELNVSA PKISRCLTML RTTFDDELFY
RRQLGLKPTP LAEHLYEPIC QFCDSVAKIE QVAFEVNHFD STPILNIAVT PGIMASLSLV
LCNNDSLKSI GKIRLHPWKD DSAELIHSGG LDLGLAFDNS HHLDLNFEHL GTLDSVYLAG
NSRHPIWEHL PHLSLDEICK HPFLYLEGKG FNDKIDPLEL YCRQSGIELL SVEKVKGKEQ
WYSNLLTMGS LAFAPAVEAE IINNMPGIRI EELPEAEMKK LHGDMMSPQY YLIEKPTSHR
RYTVESREMI INIIKGLLTS S
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