| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0976 |
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| Symbol | |
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| ID | 5612059 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1159166 |
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| End bp | 1159975 |
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| Gene Length | 810 bp |
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| Protein Length | 269 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931824 |
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| Product | Sel1 domain-containing protein |
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| Protein accession | YP_001472715 |
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| Protein GI | 157374115 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.135872 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGGAT TCACACTCGC AACGATCATC ACTATCGCTT TTTTAATACC ACAGCAGAGC
AATGCCTCCC CCGATAAAAA CGGGCTTGTA CCTGAATGCC AACAAGCCGA ATGTATCAAG
TACTTTCAGC AATATCGAAT GTATACCCGT CGTGGTTACT CAGATGCAAT GTACACCCTG
GCTGAACTCT ATTACCGAGG TTATGGTACT GAAAAAAACT TATCGTCAGC ACTTAAGTGG
TATCGCAAAG CAGCAAAATT CGATAATGCT GATGCGCAAT ATAAAGCGGG GGTCCTCTAC
CTGAGAGAGG GTGAATATCA AGACATAGAA CGCGGCCTTA AGTATCTTAG ATCTGCGGAC
AGAAACGGGG TCGCCGAAGC ATCTCACCTC TTAGGACTAA TCTACCTTGA GGGACAACTT
ACCGAACAAG ATCTAAAACT TGCTGATGAA TATTTTAGCC ATGCAGTGAA ATTAGGTCAT
CGAGATACCA TCAACTTTTT CAGCCAGCTT GATTCAGAGC AAAGCAATCA AAAACAGCAG
CTAAAACTGG CTGCGACCCT GGTCAAAGAT CCCGCTTACT TAGCTAGTGA CACCGACGCC
AAGCCAGAAG GTGAGATGGA AACGATTACC ATAACAGGCC CCGATCTTTC TGAGATATTT
GATTATCAGC TCGCGCAGCT GGACCTGATG TCACCGGACG CGGTAAAAGG AACCGGTACC
AATATACCGG GTCGAACCTG TGATGAGATG ATCGCCTGTG GCCATGTAGA CAGAGACAGA
TATAGAGAGT TCTTCATGTC TGGCTGGTAG
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| Protein sequence | MKGFTLATII TIAFLIPQQS NASPDKNGLV PECQQAECIK YFQQYRMYTR RGYSDAMYTL
AELYYRGYGT EKNLSSALKW YRKAAKFDNA DAQYKAGVLY LREGEYQDIE RGLKYLRSAD
RNGVAEASHL LGLIYLEGQL TEQDLKLADE YFSHAVKLGH RDTINFFSQL DSEQSNQKQQ
LKLAATLVKD PAYLASDTDA KPEGEMETIT ITGPDLSEIF DYQLAQLDLM SPDAVKGTGT
NIPGRTCDEM IACGHVDRDR YREFFMSGW
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