| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0936 |
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| Symbol | |
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| ID | 5610520 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1118048 |
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| End bp | 1119214 |
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| Gene Length | 1167 bp |
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| Protein Length | 388 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640931784 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001472675 |
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| Protein GI | 157374075 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAAAT TCCTTTCAGT CATCAGCCTG CTTTTCTTGC TCGTCCTCCA GGGATGTAGT
GCCACTTCCG AACGTACTTC AGTCAATAAT ATTGAAGCGT ATTTTTATGA TGACCATTTT
GAAGATGCCG CATCTCTGCC TCATCCAGAT GATCTGTTCT CGTTGCCATC TGAAGCGACA
AATGAGCTAA GGCGTGAGAT GTCACGGGAT AAAGTACAAC GTTCGAAGAG TGTGATGGCT
AATGAGTGGC TGGCTAAGTA TATTAATGCC GAAGAGGGGG CCTTTCAATA TCGTGACAAT
ATGACAAGAG TTCCCAGTGA AACTTTTAAT GAACGAGCGG GTAACTGCTT ATCTTTGGTG
TTATTGACTT CAGCCTTGGC CGATGTGCTT AAAGTCGAAG TTGAATTTCA AGAGGTTGAG
GTACCACCCG TATGGGATAA GCAGGGGGAT TTTTATCTTG TTAACGGTCA CATTAATCTG
AGATTACTTC CTCCTCGAAA TAGCGATACC GTGCATGTGA TGAAGCGGGC TATTCAGGTT
GATTTCTTAC CCGAGCGGGC CGTACGGGGC TATGGTAAGA AAAAAATCAG TAAGCAGACT
GTGATTGCTA TGTTTTATAA CAACGTGGCC GCAGAGTCTC TGGTTATGGG AGACTATGAT
AAGGCCTATG GCTTGTTAAA AATGGGCTTG CAGCAGAAAC CTGATTTCGT ACCGGCACTG
AACACTTTGG CTGTGCTTTA TCGGTATAAA GGTTTAGAGC AGGAGGCTGA AACTCTCTAT
AAACTCGCAT TAGATGTGAA TGCTAACGAT ATGAACGCCT TGTATAATTA TGCGGTGATG
CTTGGGGACC AAGGTAGGTT GGAGGAGTGG GCATTAGTTC ACAAAAGGCT GGAGCTGGAA
CGAATTGGAA ACCCCTATTA TTACTATGAC ATGGCTCAGC AGGCCTATTT TGATAAAGAG
TATCAAGACG CGTTGCTCTG GTATAAACGT GCGGTGGCTA AGGCTGATTA CCGACATGAA
TTCTATTTCG GATTATCTCG GGCTTACTGG AAAACCGGTG ACGAACGACG AGCGCAGAAG
AATATGGAGA AGGCCTTGAG TCTCACTCAT GATGAGAATA ATAAACTACG TTATCAGTCA
AAGTTACACG CGATGAAGAG CCATTAG
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| Protein sequence | MEKFLSVISL LFLLVLQGCS ATSERTSVNN IEAYFYDDHF EDAASLPHPD DLFSLPSEAT
NELRREMSRD KVQRSKSVMA NEWLAKYINA EEGAFQYRDN MTRVPSETFN ERAGNCLSLV
LLTSALADVL KVEVEFQEVE VPPVWDKQGD FYLVNGHINL RLLPPRNSDT VHVMKRAIQV
DFLPERAVRG YGKKKISKQT VIAMFYNNVA AESLVMGDYD KAYGLLKMGL QQKPDFVPAL
NTLAVLYRYK GLEQEAETLY KLALDVNAND MNALYNYAVM LGDQGRLEEW ALVHKRLELE
RIGNPYYYYD MAQQAYFDKE YQDALLWYKR AVAKADYRHE FYFGLSRAYW KTGDERRAQK
NMEKALSLTH DENNKLRYQS KLHAMKSH
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