| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0923 |
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| Symbol | |
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| ID | 5612493 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1103832 |
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| End bp | 1104749 |
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| Gene Length | 918 bp |
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| Protein Length | 305 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931771 |
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| Product | polysaccharide deacetylase |
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| Protein accession | YP_001472662 |
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| Protein GI | 157374062 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.213028 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCCAAC AAAACGTAAC TAAGGTCGGT CTTAGGATCG ACGTTGATAC CTATCGAGGC
ACTCGTTTAG GAGTGCCTAA GCTGCTGGAA ATTTTCCAGC GGCACGATAT CTCGGCGTCT
TTCTTCTTCA CCGTCGGCCC CGACAACATG GGGCGTCATA TCTGGCGTCT TCTGCGCCCG
GCATTCCTAA AAAAGATGCT GCGTTCTAAA GCGGCAAGCT TATATGGATG GGATATATTA
ATTCGTGGCA CTCTGTGGCC CGGTCCCATC ATAGGTAAGA AGCTAGCCCA TATCATCAAA
CAAGCCGATG ATGCAGGCCA TGAAATCGGA CTTCATGCCT GGGATCACCA CAAGTGGCAG
ATGAAAACAG ATGTGATGAC CCCTGCAGAG CTTCACAGCG AAATCGACAA AGGTTATCAG
CTGTTATCTA CGCTCACCGG CAAGCCTATT CCCTGCAGTG CAGTCGCTGG CTGGCGCTGT
ACCGATGCCA CCTTAGAGCA GAAGCAACGC TTTGGATTTC GTTATAACAG CGATTGCAGA
GGGGAGTCGA TATTTATCCC ACAGCTGGGA ATGGCACCTC AAATCCCGGT GACTTTGCCT
ACCTATGATG AGCTGGTTGG TAAAGACAAC ATAGATCACT CTAATTACAA TGCAGAGATA
ATCAAACTGG TCAATCCCGA TGGTTTAAAT GTCTATACCA TACATGCAGA GGTTGAAGGC
ATTGTTTGCG CTCAGCTATT TGAAGAGCTT ATTATCCAGG CTAAAGAAAA TAATATCGAG
TTCGTCCCCA TGATAGAGCT CTTGGATCAT GAAGATATTG ACTGGCCTCT GGATGAGATC
CTCAATATTG AGATCGATGG ACGTGAAGGC TGGTTAAGCC ATCAAGCTTC GATGATAAAT
AAACAAAAAA GTGCTTAA
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| Protein sequence | MSQQNVTKVG LRIDVDTYRG TRLGVPKLLE IFQRHDISAS FFFTVGPDNM GRHIWRLLRP
AFLKKMLRSK AASLYGWDIL IRGTLWPGPI IGKKLAHIIK QADDAGHEIG LHAWDHHKWQ
MKTDVMTPAE LHSEIDKGYQ LLSTLTGKPI PCSAVAGWRC TDATLEQKQR FGFRYNSDCR
GESIFIPQLG MAPQIPVTLP TYDELVGKDN IDHSNYNAEI IKLVNPDGLN VYTIHAEVEG
IVCAQLFEEL IIQAKENNIE FVPMIELLDH EDIDWPLDEI LNIEIDGREG WLSHQASMIN
KQKSA
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