| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0908 |
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| Symbol | |
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| ID | 5614211 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1085664 |
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| End bp | 1088492 |
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| Gene Length | 2829 bp |
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| Protein Length | 942 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931756 |
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| Product | FAD linked oxidase domain-containing protein |
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| Protein accession | YP_001472647 |
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| Protein GI | 157374047 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0247] Fe-S oxidoreductase
[COG0277] FAD/FMN-containing dehydrogenases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000203424 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTGTCAAA TGTCGATAAA TTATAAAGCA GTAGTCAGTG ATCTACGTAA GCAACTGGGT
GACAAACCTG TGACGGATGA GTATGTTCGT CGCTTCGCCT GGTCAACCGA CGCCAGTTAC
TTCAGAATTG TTCCAGAAGT CGTTGTTCAT GCCGAGAACA TGGATGAAGT TAAGCGTACT
CTAGCCGTTG CCCGTGAGCA TAATGCACCT GTGACTTTCC GCGCGGCAGG CACCAGCCTG
GCCGGTCAGG CCATTGGTGA AGGTATTTTG CTTATTCTGG GCCATGATGG TTTCAGAAAG
ATTGAAGTCA GCGACGATGC CAGGCAGATC ACCCTTGGCT CTGCCGTCAT AGGCTCCGAT
GCAAACGCTG TGTTAGCGCC GCTAAACCGT AAAATTGGTC CGGATCCGGC GACGATTGCC
TCGGCCATGG TTGGTGGAAT TGTGGCCAAC AATGCCTCGG GCATGTGCTG TGGTACCGCG
CAAAACAGTT ACCAGACCAT AGCGTCGGCC AAGTTGCTGT TCGCCGATGG CACCGAGCTT
GATACGGGTT GTAAAAAATC TAAGGTCGCA TTCGCCAAGT CCCATCCGAA AATGCTTGAG
GAAGTGTATC AACTGGCTCA TATTACGCGC CACAATCTTG TGCTTGCCGA CAGAATTCGT
AAGAAATTTT CCATCAAAAA CACCACAGGT TACGGCATCA ATGCCTTAGT CGATTTCAGC
GATCCCTTTG ATATCATCAA TCATCTTATG GTTGGCATGG AAGGCACTCT GGCCTTTATC
AACGAGGTGA CCTACCACAC GGTCAATGAA GCCAAATTTA AGGCTTCGGC CCTGGCCGTT
TTCCACAACA TGGAAGATGC GGCCCGCTCT ATCCCATTGA TCAATGGCGA AAGTGTCGCG
GCAGCCGAAC TACTCGACTG GCCATCCATC AAGGCCGTTA CCGGCAAACC CGGGATGCCT
GACTGGTTAT CTGAGTTGCC ACCTCAGTCA GCTATCCTGT TGATCGAATC CCGTGCCGAC
GATGCAGATA TATTGGATGT TTACACCCAG GATGTGATCA CCAAGCTCGA AGGATTTGAT
TTTCTACGTC CGATCAACTT TACCAGCGAT GCTGCGGTAT ACGGCGAGTA CTGGGCCATG
CGCAAGGGTC TGTTCCCAAT CGTTGCGGGT GAGCGTCCCA AAGGCACGTC GGTTATTATC
GAAGATGTGG CGTTCGAGCT TGAACACCTG GCTACCGCCG CGAGTGATAT TACTGCGCTA
ATGCACAAAT TCGGTTATCC CGAAGGTTGC ATCTATGGCC ACGCGTTAGC AGGTAACTTC
CACTTTATCA TCACGCCAAC TTTCTCGACT CAGGGTGATA TCGACAATTT CCATGCCTTT
ATGGACGAAA TTGCCAAGAT GGTAATTAAC AAGTACGACG GCTCGATGAA AGCCGAGCAT
GGTACCGGTC GCGCGGTCGC GCCTTATGTT GAGATGGAGT GGGGGGAGGA TGCTTATACT
CTGATGAAGA GCATCAAGCA GTTATTTGAT CCCCAGGGTA TCCTGAACCC GGGTGTCATC
TTAAACGATG ATCCCAAAAT CCACGTTAAA GACATTAAGC CCTGCCCGGT AGTCGATGAC
TTTGTCGATA AGTGTCTTGA GTGTGGCTTC TGTGAGAAGA CCTGCCCGAC CTCGGCGCTT
AACTTCACCC CTCGTCAGCG TATTGCCACA TTGCGTGAGA TTGCTCGTCT GGAGCAAAGT
GGTGATCAAC AGGCCGCCGA TGAAATGCGC GCTTCCGCCA AATATGATGT TATCGATACC
TGTGCGGCAT GCCAGCTGTG TACCATAGCC TGTCCTGTCG ATAATAAGAT GGGTCAGCTG
GTGCGTAAAC TCAGAACCCC ATCCATCACT AGTGGTCAGC AAAAGTTCCT CGATTTTCAG
GCGAATCATT TCGGCGCGGT AAATGGCGTG ATCAGTACCG GTTTCGATAT GTTGGGTGTG
ATCCATAAGA TCACCGGTGA CGGCATAACA GGAGCCATGA TGAAGGCGGG CCGTATGGTG
AGCAGCGAAG TGCCGTACTG GAATCCGGAT TTTCCTAAAG GTGGCAAACT TCCTAAGGTT
TCTGCAGCTA AGCCCGGACA GGAAACGGTG GTCTACTTCC CAGCTTGTGG TGGGCGTACC
TTCGGGCCTA CACCTGTCGA TACCGATAAG CGACCGCTGC CGGAAGTCGT GGTGACGCTA
CTGGAGCGAG CAGGATACAA CGTGATCACC CCACAGAAGA CGCGCGATCT TTGCTGTGGC
CAGATGTGGG AATCTAAGGG AGACTTTAAG AATGCCGATG CGAAACGTCT CGAATTGATC
CAGGCCGTTT CTGCCATGAC ACAAGGCGGA AAGTTTCCGG TGATCATCGA TGCGCTGTCA
TGTACTAAGC GAACCTTAGG CGGCGATGCA GCGCTGACTG AGAAGGTTGA GATATTGGAT
CTGGTTGAGT TTATGCATGA CAAATTGTTG CCTAAACTGA CTATTAAAAA GAAGTCTCAC
GCCGCACTGC ATCTTGGTTG TAGCGCCAGA ACCATGAAGG TTGAACCTAA AATGACCGCA
ATCGCGGATG CCTGTTGTAA CCAGGTGATC CGTCCGGCGG GGATCGAATG TTGTGGTTAT
GCGGGTGAGA AGGGGCTCTA TAAGCCAGAG ATCAATGCCA GCGCACTGCG CAACATTAAG
AAGTTGATCC CGGTCGATGT GAAAGAGGGG TATTACGCTA ACCGTATGTG TGAAGTCGGC
CTGACTCAAC ATAGCGGCGT CCCTTATCGT CATCTGGCCT ACCTGCTCGA AGAGTGTACC
CGTGGCTAA
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| Protein sequence | MCQMSINYKA VVSDLRKQLG DKPVTDEYVR RFAWSTDASY FRIVPEVVVH AENMDEVKRT
LAVAREHNAP VTFRAAGTSL AGQAIGEGIL LILGHDGFRK IEVSDDARQI TLGSAVIGSD
ANAVLAPLNR KIGPDPATIA SAMVGGIVAN NASGMCCGTA QNSYQTIASA KLLFADGTEL
DTGCKKSKVA FAKSHPKMLE EVYQLAHITR HNLVLADRIR KKFSIKNTTG YGINALVDFS
DPFDIINHLM VGMEGTLAFI NEVTYHTVNE AKFKASALAV FHNMEDAARS IPLINGESVA
AAELLDWPSI KAVTGKPGMP DWLSELPPQS AILLIESRAD DADILDVYTQ DVITKLEGFD
FLRPINFTSD AAVYGEYWAM RKGLFPIVAG ERPKGTSVII EDVAFELEHL ATAASDITAL
MHKFGYPEGC IYGHALAGNF HFIITPTFST QGDIDNFHAF MDEIAKMVIN KYDGSMKAEH
GTGRAVAPYV EMEWGEDAYT LMKSIKQLFD PQGILNPGVI LNDDPKIHVK DIKPCPVVDD
FVDKCLECGF CEKTCPTSAL NFTPRQRIAT LREIARLEQS GDQQAADEMR ASAKYDVIDT
CAACQLCTIA CPVDNKMGQL VRKLRTPSIT SGQQKFLDFQ ANHFGAVNGV ISTGFDMLGV
IHKITGDGIT GAMMKAGRMV SSEVPYWNPD FPKGGKLPKV SAAKPGQETV VYFPACGGRT
FGPTPVDTDK RPLPEVVVTL LERAGYNVIT PQKTRDLCCG QMWESKGDFK NADAKRLELI
QAVSAMTQGG KFPVIIDALS CTKRTLGGDA ALTEKVEILD LVEFMHDKLL PKLTIKKKSH
AALHLGCSAR TMKVEPKMTA IADACCNQVI RPAGIECCGY AGEKGLYKPE INASALRNIK
KLIPVDVKEG YYANRMCEVG LTQHSGVPYR HLAYLLEECT RG
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