| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0833 |
|---|
| Symbol | |
|---|
| ID | 5612966 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 988181 |
|---|
| End bp | 989605 |
|---|
| Gene Length | 1425 bp |
|---|
| Protein Length | 474 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640931681 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001472572 |
|---|
| Protein GI | 157373972 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAGAA CCATACTATT GCTTATTTTT TTCTGCCTCA GCTCGTTTTC CACAGCCAGT
TATGCTGTAC CTACAACTTC AGAGGCAACC CCGCCTCAAA CTTGGCATTA TGTGAATGCA
GATGGTGAAC TCAAGGTAAA GCTCTACTTT TTCTGGTCTA AGACTTGCCC TCACTGCGCC
GAAGCCCATC CATTTATCGA CTCACTTCCC CAAAGATACC CCTGGATAGA GCTGGAGTCC
TATATGGTTT CAGAGCCAGG CTCTATGAAT AAATGGAAAG AGATCTCAGC ATTAACTGAG
ACAGAGGCAA GATCGGTTCC CTATATGGCA TCGTGTGAAA AAGCGGTGAT TGGTTACAGC
AGTGAAGCGG TTACGGGGCA GTATTTGCTT CAAAACCTCA AGACCTGTTA TCAATCTTTA
GGCGGAACAC TCGATCCTAA CGAGACTTAT CAGCCGGTCG CCTCAACGGC AACAAAGGAT
GCCCCTCTTT TCGGCACTTG TAGTGATAGC AGTGGAGATG AAGCTGGTGC TGGTACATGC
GATCTGGGGT TAGCAGAACC CCAAGCTCAC ACCAGCTCAG TTCAACCGGT AGAGCTGCCC
CTGATTGGGG TGGTAAACCC GGAGCAGCTG TCCCTGCCTC TGTTGACCGT TGTACTTGCT
GGCGTGGATG CCTTTAACCC TTGTGCCTTC TTCGTACTCC TGTTTTTGCT TTCGATCATG
GTCAATGCAA AGAGTCGAAC ACGCATGCTC ATCGTCGGCG GAATATTCGT TTTCTTCTCA
GGCTTTATCT ACTTCCTCTT TATGATCGCC TGGTTGAATA TATTTGAGCT GTTAGGCGCT
GGCAGCGATG GTGGAATGAT TATTCTCGGA GCGGGTATCC TGGCCCTTAT CGCCGGTATG
ATTAACTTGA AAGACTACTT CTATACCAAG GGGGAGGTAT CGCTCTCCAT GTCGGCAGAA
AACCGAACCG GGCTTATCAA ACGGATGGGG AAGCTCACCA ATGCCAGTTC AATGGCGGCA
ATGATAGCCG GTACCGTTGT CCTGTCCATT CTCGCCAACG CATATGAGCT ACTCTGTACC
GCTGGATTCC CGATGATATA TACCAGTGTA CTGGCAATGC ATGAGTTACC GGATATGGAA
CGATACCTCT ACTTAGCTTT TTATAATATC GTCTATGTCA TTCCACTGGC GGCTATTGTT
ATCGCCTTCA GCGCAACCTT AGGCAAGCGC AAGCTCACCG AAAAGGAAGG ACAAACTCTT
AAGCTGATGT CAGGCATCAT GATGGTAGGG CTCGGCGGAA CGCTAGCAGC AGATCCCACC
GCTCTGCAGA ATGTCGCACT TGCTATCGGT CTTATCCTAA GTTCGATTCT GCTTACATTC
GTCATCACGA TGACAAGAAA GACATTGGCA AAATCTAAGG GTTAA
|
|---|
| Protein sequence | MARTILLLIF FCLSSFSTAS YAVPTTSEAT PPQTWHYVNA DGELKVKLYF FWSKTCPHCA
EAHPFIDSLP QRYPWIELES YMVSEPGSMN KWKEISALTE TEARSVPYMA SCEKAVIGYS
SEAVTGQYLL QNLKTCYQSL GGTLDPNETY QPVASTATKD APLFGTCSDS SGDEAGAGTC
DLGLAEPQAH TSSVQPVELP LIGVVNPEQL SLPLLTVVLA GVDAFNPCAF FVLLFLLSIM
VNAKSRTRML IVGGIFVFFS GFIYFLFMIA WLNIFELLGA GSDGGMIILG AGILALIAGM
INLKDYFYTK GEVSLSMSAE NRTGLIKRMG KLTNASSMAA MIAGTVVLSI LANAYELLCT
AGFPMIYTSV LAMHELPDME RYLYLAFYNI VYVIPLAAIV IAFSATLGKR KLTEKEGQTL
KLMSGIMMVG LGGTLAADPT ALQNVALAIG LILSSILLTF VITMTRKTLA KSKG
|
|---|
| |