| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0786 |
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| Symbol | |
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| ID | 5609917 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 930763 |
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| End bp | 933963 |
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| Gene Length | 3201 bp |
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| Protein Length | 1066 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931630 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_001472525 |
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| Protein GI | 157373925 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3264] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.213544 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000495101 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGACTAA TTTTACTGCT CTTAGTATTC ACCTTAATCC CCTTTGCCAA TGCCAGTTCA
CCTCTTGGGC TTGATAAACG TCTGGGGATA AATCAAACCA CAGTTAAAAA TCTTTCGGTT
GAAGAAAAAC TTGCACATTT AACACGTGCG ACCGAAGAGC AGAAGTTGCT TGAACAGAGC
TATCAAGAGA CGATTGATAA CTATCAGACT CATAAGCTCA GTATTGAACA TCAACTTATT
CAAGCTCAAC CCCCTCTCTC TTTGTCACAA AATCAGGGAT TAACTCAACA AGCCTCTCTC
GCTTATCTGA GGCTCTCGGA GTTAAAAGAG ACAGAAGCCA ACCTCAATGG GAAAATAACG
GACTTAATTA AGCAGCATAA CCAGTTGCCG AACAAGATAA GTTCGGCCAG ACAAATTCTC
TCGCATAGCA AGAAACAAAC TATTAGTCAA CCACCTAGCG GAGAGGAACT TGTACTTCAG
GCACAACGTC AGCTCTATGT TCAAACCTTA GCGACACTCG AAGCAGAACT TGCCAGCAGT
CAAAAACGCA TAGACCTCAA TCAGAAACAG GTGTTACTGG TAAGAAAACA GCTATCCCAA
CAGGAAAACC TGATTGAATC GCTCAATAGC GCTGTGGCCC TGCAACGCCA AAAAAGAACC
GATGCTACAA TCGCTAAGAG TCTGATTGAA ACCTCGACGG ACAAAGACCC TCTCACACAA
GAGCTAAGCT CAATAAATCA AAACTACGCC TCAGATTTAA AGAGTCTGAC AAACAAAACC
AACCAAGTGG TAAAGCAGCA AGAGGTGGCT GAAAACAGAT ATCAACAGCA AGCCAAGCAG
CTGGCCAATA TTCAACAACA GATAGGATGG ATTAAGCTCA ACTCGGCTTT TGGCGAACGC
TTTCTGCAGA TGCTGCAAAC ATTACCGAAT CCGCCAAACC AGGAAAAACT ACAAAACAAA
ATTGCCAATG CAAGAATGGC GAGATATCAA CTCGAACAAG ATCAAACCCT CAACGGACAG
CAGCTAATAG CTCAAGATTC ATTCACAAGC ATACAGAATA AATTACTCGA CTCTCAGCAT
GCGTTAATCA CTCAGCTATT ACAGAGCTAT GATCTATACC TGAGTGAACT GGGTGACTTA
AGAGTCATCT ACGAGCAGTT AACCCAACAG CATTTAACCT TAAAAAGTAC CCTGAACGAA
CACCTGTTTT GGGTTCCAAA TGCAAACTCT ATCGGGCAAC TCTGGTTCAC CGAGTTCTAC
CAGAGCACAC AATGGCTGAT TCATCAGGCT CCCTCCATCG ATCTATCAAA CTCCTTCAGT
GAGCGAAGTG GTTTCTGGTC CTGGTGGATT ATACTCTTTG TTCTCAGTCT TGTGGCCCAG
GATATTCTGA CACCTAAGTT TAAAGCCGCC ATGGCCCAGG ATGTAACGTT CGTAGGGAAT
GTTACCCAAG ATCAATTTGT TTATACCTAC AGAGCCCTTA TCAATTCGCT GGCGTACAGC
ATCATCAAGC CACTGCCCGT CATCACCGCG GGCTTAATCA TGTACGACTC CAGCCAAAAT
ATGGTTTCAG CCATAGGCAT GGGCGTACTC GCCATTGGGC TACTCTACCT GCTCTATCGT
TTTACTTACC TGCTGGCACT CGATCGCGGC CTGTTGATCA GCCACTTCAA GGGGGAAAAA
GAGATCATCC GCGAGGGTCA GCTCAGGTTT AAGACATTCA CATTAATGGC CATTCCTTTC
TTCGGCATCA TGGGGTTTAC TGAGTTCATC GATAACTCTG TGTTACGAAA CAGCATAGGA
AGAGGCGCAT TTATTATCTT CTGTATCATG TTGCTTTGGT TCTACAAAGA TATTCTGGCA
CTGTCGAAGA GAGAACATCA TTACCATCAG GATGGTAAAA ATAAGAAGCT TATTCAACGT
ATCTTATGGA CCATTCTTCT AGTCGTTCCC CCCATGTGTG CGGTGCTTGC ATTCAGAGGT
TACTACTACA CCGCCTTTCA GATGCTATTA CAGTTGCAGT TATCCCTGCT GCTCTCATTA
GGGTTTATGC TGCTCTATCA GTTGATAAAG CGCTGGATGT TGATTGAGCG ACGCAGAATA
GCCTTCGATC GGGCAAAAGC CCGAAGAGCC GAGATCCTCT CGCAACGTGA ACGGGGTGAA
GACCCTCAAA ACACCAATGA CGCTCTCGAT ACGTATGAAG AGCCCGTGGT CGACTTAGAA
ACTATCTCCA GCCAGTCTCT GGGCTTAGTG CGCTCATTGC TGCTGCTGGC CTTTCTCGTC
TGTTTAATCG GCCTGTGGAC CCAGACTCAC ACGGCTCTGT TCTCTCTGCT CGACGGGATC
ACACTCTGGA CCAGTAATTC AATGATAAAT GGCATTGAAC AGCAGCTGCC AATCACATTA
AAGTCACTGC TGTTAGGGCT TATCATTGTC GGCTTCTCAC TGATGATAGC CACCAACTTA
CCTGGCCTGC TCGAACTAAT GATATTGCAA CGGCTCGATC TAACCCAAGG CACCGGTTTT
GCGATAACCA CAGTCAGTCG CTACCTGGTG GTTTTCTTCG GTCTGCTCAG CGGTTTCTCG
ACCCTTGGGA TGGAGTGGTC AAAATTACAA TGGCTCGTCG CCGCTCTATC GGTTGGTTTA
GGTTTCGGCC TGCAGGAGAT CTTCGCTAAC TTTATCTCCG GTTTGATTAT TCTTTTTGAA
AAACCGGTTC GTATCGGCGA CACCGTCACC ATCAGAGATC TGACAGGAAC GGTGAGTAAA
ATTCAAATTC GAGCCACGAC CATTATTGAC TGGGACAGAA AAGAGATTAT CGTTCCTAAC
AAAGCATTTA TAACCGAGCA GCTAATCAAC TGGTCGCTAT CGGATCCGAT CACCCGTGTC
ATAGTGTACG TTTCAGTTGC AAGAGACTCA GATCCGGCTC GTGTCGAAGC CGCATTGTAT
CAAGCGGTAA AGGAGTGTGA TGACGCCTTG GAGACACCAG AACCTGAGGT CTGGTTTGCC
GGTTTTGGCA AACACACTCA AGACTTCGAA GTCAGAGCAT ACGCAAAAGA TATGAACTCA
CGTTGGCCGC TGCGTCATAA GTTACATAAA CGGATCAGTA AAAAGTTAAA TGAAAACAAC
CTGGAACTGG CTTATCCGCA ACTGGAAGTA CATATTAACA ATAGCCAAAA CAAAGATGCT
CAAGGACTTA TCAGAACCTA A
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| Protein sequence | MRLILLLLVF TLIPFANASS PLGLDKRLGI NQTTVKNLSV EEKLAHLTRA TEEQKLLEQS
YQETIDNYQT HKLSIEHQLI QAQPPLSLSQ NQGLTQQASL AYLRLSELKE TEANLNGKIT
DLIKQHNQLP NKISSARQIL SHSKKQTISQ PPSGEELVLQ AQRQLYVQTL ATLEAELASS
QKRIDLNQKQ VLLVRKQLSQ QENLIESLNS AVALQRQKRT DATIAKSLIE TSTDKDPLTQ
ELSSINQNYA SDLKSLTNKT NQVVKQQEVA ENRYQQQAKQ LANIQQQIGW IKLNSAFGER
FLQMLQTLPN PPNQEKLQNK IANARMARYQ LEQDQTLNGQ QLIAQDSFTS IQNKLLDSQH
ALITQLLQSY DLYLSELGDL RVIYEQLTQQ HLTLKSTLNE HLFWVPNANS IGQLWFTEFY
QSTQWLIHQA PSIDLSNSFS ERSGFWSWWI ILFVLSLVAQ DILTPKFKAA MAQDVTFVGN
VTQDQFVYTY RALINSLAYS IIKPLPVITA GLIMYDSSQN MVSAIGMGVL AIGLLYLLYR
FTYLLALDRG LLISHFKGEK EIIREGQLRF KTFTLMAIPF FGIMGFTEFI DNSVLRNSIG
RGAFIIFCIM LLWFYKDILA LSKREHHYHQ DGKNKKLIQR ILWTILLVVP PMCAVLAFRG
YYYTAFQMLL QLQLSLLLSL GFMLLYQLIK RWMLIERRRI AFDRAKARRA EILSQRERGE
DPQNTNDALD TYEEPVVDLE TISSQSLGLV RSLLLLAFLV CLIGLWTQTH TALFSLLDGI
TLWTSNSMIN GIEQQLPITL KSLLLGLIIV GFSLMIATNL PGLLELMILQ RLDLTQGTGF
AITTVSRYLV VFFGLLSGFS TLGMEWSKLQ WLVAALSVGL GFGLQEIFAN FISGLIILFE
KPVRIGDTVT IRDLTGTVSK IQIRATTIID WDRKEIIVPN KAFITEQLIN WSLSDPITRV
IVYVSVARDS DPARVEAALY QAVKECDDAL ETPEPEVWFA GFGKHTQDFE VRAYAKDMNS
RWPLRHKLHK RISKKLNENN LELAYPQLEV HINNSQNKDA QGLIRT
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