| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0779 |
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| Symbol | |
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| ID | 5611373 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 922455 |
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| End bp | 924341 |
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| Gene Length | 1887 bp |
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| Protein Length | 628 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931623 |
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| Product | DNA topoisomerase IV subunit B |
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| Protein accession | YP_001472518 |
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| Protein GI | 157373918 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
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| TIGRFAM ID | [TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.257119 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000426246 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACAAACC AATACACCTC AGATGCCATC GAAGTCTTAA ATGGGCTCGA TCCAGTTAAA
CGCCGCCCTG GTATGTATAC CGATACCACG CGTCCTAACC ACTTGGGACA AGAGGTTATC
GACAACAGTG TCGATGAAGC ATTAGCAGGA CACGCGACTA AGATCGATGT CATCTTGCAT
AAAGATAACT CTCTCGAGGT TATTGATGAT GGCCGAGGGA TGCCCGTAGA TATTCACCCT
GAAGAGGGGA TCCCTGGCGT CGAATTGATC TTAACTAAAC TGCACGCCGG CGGTAAGTTC
TCGAATGATA ACTATCAATT TTCGGGTGGC TTGCATGGCG TCGGGATCTC AGTGGTTAAT
GCGTTATCGA GCCGTGTAGA AATTACGGTT AGACGTAATG GCATTGTTTA TGACATGGCT
TTCGAGCACG GTCATAAGGT CGAAGACCTT GTTGAAACCG GAACTTGTGG CCGTAGAAAT
TCAGGAACTC GAGTTCACTT TTGGCCGACT CCCAGTTACT TCGATTTTGA AAATTTCTCT
ATTTCCAAGC TTGTATACCT GTTAAAAGCC AAAGCGGTTT TGTGTCCCGG ACTTAAGATC
AAGTTTGTGA ACAAGCAAAC TGATGAGGTC TTAGAGTGGT ACTATGAAAG CGGATTAACA
GATTATCTTA CCTCGTCGAT TAAAGATGCA CTCATGTTGC CTGAAGAGCC ATTTGTAGGC
AGCTTGAAGG GGAATCTTGA GGCGGTAGAT TGGGCGATAA CCTGGTTGCC TGAGGGAGGA
GATTACCTCA ATGAAAGCTA TGTTAACCTC ATTCCTACCC CACTGGGGGG GACTCATGTT
AATGGTTTCA GGCAGGGCTT GCTCGACTCC ATGCGCGAGT TCTGCGAGTT TCGTAACCTG
ATCCCAAGAG GGATAAAACT GACCCCCGAA GATATTTGGG ATCGCAGTAG CTTTATTTTA
TCGGTCAAGA TGCAAGACCC TCAATTTTCC GGACAGACTA AAGAGAAGTT GTCGAGTCGC
CAAAGTGCAG CGTTTGTTTC GGGTATTGTC AGAGATGCGT TTAGTCTCTG GCTTAATACC
CATACTGAAC AGGCCGAAGC ACTCGCCGAA ATGTGCATCA ACAATGCACA GAAACGATTG
AAATCTGCGA AGAAAGTCGC ACGTAAGAAG GTAACCTCGG GTCCAGCTCT GCCAGGTAAA
TTAACTGACT GTAGTGGCCA AGATCCTATG CGAGGAGAGC TATTCCTGGT GGAGGGTGAC
TCTGCGGGAG GAAGTGCTAA GCAGGCTCGA GATCGTGAGT TTCAGGCGAT AATGCCCCTG
AGAGGTAAAA TCCTAAATAC TTGGGAGGTC GATGCAAGTC AGGTACTGGC ATCCCAAGAG
GTACATGATA TCTCAGTTGC CATAGGGTGC GATCCGGATT GTGATAATAT TTCAGAGCTA
AGGTATGGCA AAATATGCAT ATTAGCCGAT GCGGATTCTG ATGGTTTACA TATTGCGACC
CTGCTTTGTG CTCTGTTTAT GAAGCACTAT AAAGTGTTGG TTGAGCATGG ACATATCTAT
GTCGCCATGC CGCCTCTGTT CCGTGTCGAT GTGGGGAAAG AGGTTTTTTA TGCCCTGGAT
GAGGCGGAAA AAGAGGGCAT ACTGGATCGA ATTGCAGCTG AGAAGAAGAA AGGTAAAGTT
CAGGTTACCC GATTTAAAGG ATTGGGTGAG ATGAATCCGC TGCAGTTGAG GGAAACGACG
ATGGATCCCA ATACTCGTAG GTTGGTTCAG CTTACGGTCG ATGATGCCGA AGCGACAATT
GCGCTGATGG ATATGTTACT TGCCAAGAAA CGCTCGGGTG ATCGAAAGAC TTGGTTAGAG
ACTAAAGGTG ACTTGGCTGA TTTTTAG
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| Protein sequence | MTNQYTSDAI EVLNGLDPVK RRPGMYTDTT RPNHLGQEVI DNSVDEALAG HATKIDVILH
KDNSLEVIDD GRGMPVDIHP EEGIPGVELI LTKLHAGGKF SNDNYQFSGG LHGVGISVVN
ALSSRVEITV RRNGIVYDMA FEHGHKVEDL VETGTCGRRN SGTRVHFWPT PSYFDFENFS
ISKLVYLLKA KAVLCPGLKI KFVNKQTDEV LEWYYESGLT DYLTSSIKDA LMLPEEPFVG
SLKGNLEAVD WAITWLPEGG DYLNESYVNL IPTPLGGTHV NGFRQGLLDS MREFCEFRNL
IPRGIKLTPE DIWDRSSFIL SVKMQDPQFS GQTKEKLSSR QSAAFVSGIV RDAFSLWLNT
HTEQAEALAE MCINNAQKRL KSAKKVARKK VTSGPALPGK LTDCSGQDPM RGELFLVEGD
SAGGSAKQAR DREFQAIMPL RGKILNTWEV DASQVLASQE VHDISVAIGC DPDCDNISEL
RYGKICILAD ADSDGLHIAT LLCALFMKHY KVLVEHGHIY VAMPPLFRVD VGKEVFYALD
EAEKEGILDR IAAEKKKGKV QVTRFKGLGE MNPLQLRETT MDPNTRRLVQ LTVDDAEATI
ALMDMLLAKK RSGDRKTWLE TKGDLADF
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