| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0773 |
|---|
| Symbol | |
|---|
| ID | 5614046 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 917090 |
|---|
| End bp | 917854 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640931617 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001472512 |
|---|
| Protein GI | 157373912 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0548647 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.0000000000796342 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA CATTACTTGC ATGTGCCCTG CTTGGTTCAC TGGCTGCTAC CTCTGTTCAG
GCTGCTTCAC TGGTAGGATT TAAAGTCGGT GGTGATTACT GGAAGGCGGA TACAAGTGGA
ACTTTTGCTG AAAATGGTCA ACCGCAGCAA GACTTTAACT ATAGTTCTGA CTCTCAGGGC
AGTGTTTGGG TGGCTGTTGA GCACGGGATC CCACTTATTC CTAACTTCAA GATCCGTGAA
AATAGTTTGG ATTCGGGTGG TAATGCAAGT CTTGCAACGG GGACTACGAT GAACTTCGGC
GGTAAAGAGT TTACCGGTGA TATTTCATCG AATACCGATC TCAGTAATAC TGATTTCGTC
CTCTATTATG AGTTGTTAGA TAACGATATG GTGGCATTAG ATTTAGGTGC CGCATATAAG
AAGATGCATG GTTCGTTCCG TGTGAATCAA TTAGATACTA ATGGTGTGTC TCGTCAAAAC
TCAGAGAAAG AGCTCGATAG CGGTATTGTG ATGGCCTATG CCGATGCACA GGTTGGCGTT
CCGGGTCTGG GTCTTTACGG TTTTGCCGAA GTGATGGTCG GTATCGATGA GTCCAGCGTC
TATGATTACT CTGTAGGTTT AGGGTGGCAG TTTGATGGTA CTGCGTTAGA TACTAAGGTG
CGCGTGGGTT ACCGTGACTT TAGCTTCGAT GTAAATGACT TCGATGGTGT GAGTACAAAC
TCACAGTTTA AGGGTTACTT CGCCGGTGTC GAACTGGTGT TCTAA
|
|---|
| Protein sequence | MKKTLLACAL LGSLAATSVQ AASLVGFKVG GDYWKADTSG TFAENGQPQQ DFNYSSDSQG
SVWVAVEHGI PLIPNFKIRE NSLDSGGNAS LATGTTMNFG GKEFTGDISS NTDLSNTDFV
LYYELLDNDM VALDLGAAYK KMHGSFRVNQ LDTNGVSRQN SEKELDSGIV MAYADAQVGV
PGLGLYGFAE VMVGIDESSV YDYSVGLGWQ FDGTALDTKV RVGYRDFSFD VNDFDGVSTN
SQFKGYFAGV ELVF
|
|---|
| |