| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0766 |
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| Symbol | |
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| ID | 5611236 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 912454 |
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| End bp | 913437 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931610 |
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| Product | tRNA-dihydrouridine synthase A |
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| Protein accession | YP_001472505 |
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| Protein GI | 157373905 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00742] tRNA dihydrouridine synthase A |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000000636307 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGTCATCTA CTCTGACCTC AACGATCAAC CGAACCTTCT CTATCGCTCC AATGCTGGAT
TGGACCGATC GCCACTATCG TTATATGGCG CGCCTGATGT CAGCTGAGTT ATTGCTGTAT
ACGGAGATGG TCACGACGGG GGCCATTATC CATGGTAAAG GCGATTACCT TGCTTACAAT
AGCGAAGAGC ACGCATTGGC GCTTCAGCTT GGTGGTTCCA ATGCCCATGA CCTGGCAATT
TGCGCTAAGC TCGCGGCAGA TAGAGGCTAT GATGAGATTA ATCTAAATGT AGGTTGTCCT
TCAGACAGGG TTCAAAATGG TCGTTTTGGG GCCTGTCTTA TGGCCGAGCC TAAGCTTGTT
GCCGAGTGTG TAACGGCGAT GCGAGAGGTC GTAGATATTC CTGTGACGGT AAAGACACGT
ATCGGGATCG ATGAGCAGGA CAGTTACCCG TTTCTTACCG AGTTTGTAGA GACTGTTCGC
GACGCGGGTT GCGATACGTT TATCGTGCAT GCCAGAAAGG CGTGGTTGAA GGGGTTAAGC
CCGAAAGAGA ACAGGGAGAT CCCTCCATTA GATTACGACC GCGTCTATCA ACTTAAACAA
GATTATCCGG AGTTGAGCAT CTCAATCAAT GGTGGTGTTA AGTCCCTCGA TGAGTGCCGT
ACTCATTTGA CTAAGCTCGA TGGTGTGATG GTGGGGCGTG AAGCCTATCA AAACCCTTAT
ATGTTAGCCG AAGTGGATCA ACAACTCTGT GGTAGTGACA GACCCGTTTT GAGTCGAGAT
GCTGTTTTAG AGAAATTTAT TCCTTATATA GAGAAACATC TCCAATCGGG TGGTCGTTTG
AACCATATCA GTCGTCATAT GACTGGCTTA TTCCAGGGAG AGCCGGGTTC TCGTGTCTGG
AGACGATATA TTAGTGAAAA TGCGCATAAA CCTGGCGCCG GTATAGAAGT CATTGAACAA
GCAAGAAAAA ACATGAGTAT CTAA
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| Protein sequence | MSSTLTSTIN RTFSIAPMLD WTDRHYRYMA RLMSAELLLY TEMVTTGAII HGKGDYLAYN
SEEHALALQL GGSNAHDLAI CAKLAADRGY DEINLNVGCP SDRVQNGRFG ACLMAEPKLV
AECVTAMREV VDIPVTVKTR IGIDEQDSYP FLTEFVETVR DAGCDTFIVH ARKAWLKGLS
PKENREIPPL DYDRVYQLKQ DYPELSISIN GGVKSLDECR THLTKLDGVM VGREAYQNPY
MLAEVDQQLC GSDRPVLSRD AVLEKFIPYI EKHLQSGGRL NHISRHMTGL FQGEPGSRVW
RRYISENAHK PGAGIEVIEQ ARKNMSI
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