Gene Ssed_0692 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0692 
Symbol 
ID5612407 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp834112 
End bp835326 
Gene Length1215 bp 
Protein Length404 aa 
Translation table11 
GC content49% 
IMG OID640931536 
Producthistidine kinase A domain-containing protein 
Protein accessionYP_001472431 
Protein GI157373831 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACCTA AGCTCAGCTT AAAGCGTGTC TATCAGGTCT ATGGCTTATG TTTTTTGGCG 
ATAACCTTGA TCATCAATAG TTTCATCCCG TTGTGCATGA TGTGTACCGG CATGTTCAGC
ATGCATGACA TTACCATGAG CAATGCGGCG CAAGCGGCAG CGCTTTATAC CAGCCCGAGA
AATAATCTCT TTCAAACAGA CAATATTACG GTATTTCCCA ATTGGGAGTC GGTGCCGGAA
CGGGTGAAGG CGATAAACGG AGGCGTTGCT CCCGATAAGC CACAAAATGT GAAGCACCAG
CATACTGACG GGCAGTTTAT CGATGCCCTG ATGTTGCATC AGGGGCAAGA GGGTCAAGAG
AGCTATGTGT GGCTGCATTA CAACGCGACT CACGATCTCG AATTTGCGCC GAAAAACATG
GCAGCCATCT TACTCTTAGT CATCATGACA TTTACCGTGA ACGCCATTCT GGCTTGGTAT
CTACAGAGCC GGGTGATTTC GCCGGTGCAT GAGATCAGCC GGGCGATAAA GCAACACGAC
TGGCAGAAGA TGCAACAGCT TCGTTTCCCT AAGCAGTGTT ATGCCGAACT TCAATCGATC
GTCGATGCCC TGGACAGCTC GATTAAACAG CTCAAGGAGG CCCAGCAGCG CGAGTTATCT
TTCCTGCGGT TTGCCAGCCA TGAACTGAGA ACGCCTATCG CCATATGTCA GTCTTCATTC
GATATTCTGA CCCTGCAGCA GGGAAAGCTG ACGGGACCAA CCCTACATGC CAGTCAGGCA
ACGACTCAGA TGAAATCGAT CACCGAGACA CTGCTATGGC TGATGAGCTC AGATTGCAGC
CCGATGAATA GCAGTAATGT GAAGCTGGCA TCTCTACTGG AAAGCATCAT CTATGATCAA
AAATATGCTC AGGGGAGTGA TGTACCGGTC GAACTGAAGT GCGATGAAAC CGAGCTGTTT
GTGCTCAAGG AGCCTTTAAC TATTGTGCTG AACAACTTAG TGCGTAACAG CTTAGAGCAT
GGTGCTAAAG GTATCTCCAT CGTTCAGGCT GGTAACAGAA TCGATATCGT TAACCCGCTG
TCCCTGCATA ACTCCAGCGG CTTCGGGCTG GGCTTGATGT TAGTCGAAAG GTTGGCAAAA
CAGCTTAATT GGCACTATTC GACCAGTAAC GATCATAACT CCTTCAGGGC TACGCTCATC
ATACGGCCCT CTTAA
 
Protein sequence
MKPKLSLKRV YQVYGLCFLA ITLIINSFIP LCMMCTGMFS MHDITMSNAA QAAALYTSPR 
NNLFQTDNIT VFPNWESVPE RVKAINGGVA PDKPQNVKHQ HTDGQFIDAL MLHQGQEGQE
SYVWLHYNAT HDLEFAPKNM AAILLLVIMT FTVNAILAWY LQSRVISPVH EISRAIKQHD
WQKMQQLRFP KQCYAELQSI VDALDSSIKQ LKEAQQRELS FLRFASHELR TPIAICQSSF
DILTLQQGKL TGPTLHASQA TTQMKSITET LLWLMSSDCS PMNSSNVKLA SLLESIIYDQ
KYAQGSDVPV ELKCDETELF VLKEPLTIVL NNLVRNSLEH GAKGISIVQA GNRIDIVNPL
SLHNSSGFGL GLMLVERLAK QLNWHYSTSN DHNSFRATLI IRPS