| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0690 |
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| Symbol | |
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| ID | 5612267 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 832686 |
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| End bp | 833444 |
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| Gene Length | 759 bp |
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| Protein Length | 252 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931534 |
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| Product | LuxR family transcriptional regulator |
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| Protein accession | YP_001472429 |
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| Protein GI | 157373829 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAAAT TAACACGCTT GTCGGGGCAT GAGACTGCCA AAAGCAGCCC CCTGGCCGAA
AGTATTCTCA ATAATATAAA GCTTCCTATC GCCGAGCATG GTTTTGGAGG GTTCTGGTTT
CAGGGAATCG CCAATAGCGC CTATCAAGAC TATATGCAGA ACAGCCGAAA GAGTCTGCTG
ACACGAAGAG TATTACGAAG TCGTGGTGGC GTGTTTGCTT CATCACCGAC AGTTCAGCAG
CTACACGAAC AATACGTGAC ACGCGTCGCG CCTACAGATA TTAACTTTGG CGAAGCCTTG
CGGCTCGAGT CCCCCTATTG TTATGTTCTG TGCGAAAATG AAAAGCCGAA TAAAGCGAAA
AAGCTCTTCA ATCGCCATGG GGTGAATACC GTCATGAGTT GGCCATTGAG ACACTTTGCA
TCGGATGCCT GGGGCGGGCG ATTTACCCTG CTATCTAAGC ATCCACAGGG TGAAATAAAT
TTGATCGGTT TAGAGGCCAC ACTCAAACAA GCTCAGATGA GTCTGTTTGA ACATTTTCAT
AATGAGATAA ATCCTTATCG GCAAAATAAC CTATTTAACC AAACGGCAAT CAAGGCACTG
AAAATGGCAG CGACGGGACT CCATAATTAT GAGATCTCTC AGGAGCTTCA TATTACCGTT
CGCGGTGTGG AATACCATCT CGAGTCCATG AGAAATAAGT TGTCTGCCAG TAACAGGGCT
AACTTGGTTC ATATTGCACA TCAACTGGAA ATTATATAG
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| Protein sequence | MEKLTRLSGH ETAKSSPLAE SILNNIKLPI AEHGFGGFWF QGIANSAYQD YMQNSRKSLL
TRRVLRSRGG VFASSPTVQQ LHEQYVTRVA PTDINFGEAL RLESPYCYVL CENEKPNKAK
KLFNRHGVNT VMSWPLRHFA SDAWGGRFTL LSKHPQGEIN LIGLEATLKQ AQMSLFEHFH
NEINPYRQNN LFNQTAIKAL KMAATGLHNY EISQELHITV RGVEYHLESM RNKLSASNRA
NLVHIAHQLE II
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