| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0647 |
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| Symbol | |
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| ID | 5613737 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 784917 |
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| End bp | 785570 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931492 |
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| Product | cold-shock DNA-binding domain-containing protein |
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| Protein accession | YP_001472387 |
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| Protein GI | 157373787 |
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| COG category | [K] Transcription |
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| COG ID | [COG1278] Cold shock proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAGGG GCACATTAGT TCGATGGAAC GACGAAAAAG GCTTTGGCTT TATTAAGCCT
GAAGCAGGTA ATGGTAAAGA TGTGTTTATC CACATCTCAG CCCTAAAGCA TATGGCAAGA
AAGCCTATGG TCGGCGATGC TATTCAGTAC CTGACTGAGC AACAAGCTGA CGGCAAAGTT
AAAGCCATCA AGGCCAGCAT CGAAGGCGTT GCAGTTGTCG CCTCAACGTC CAAACGCTCT
GCGCCCACTA GCCATCATAG AAGCAGTCAT AATAGCTATA GTCATACTAG TAACAGTCAC
AATAGTAAGA GCCACAACAG ACACAGCCGC CAATCTAAAT CATCCAGTGT CATGCTCATA
CCACTAGTCG TCATACTCGC ACTAGGGATC TTCGGCTTTA AAAGATATGA AGCGTTAACT
GCTCAATCAA ACACACCAGT AAAGGTCACT AACGAACTTT CCCAGCAGCC AGCCACAGAA
CAAATAAAAT GGACTCAGCC CAAAGAGACA TTCCGCTGTG AAGCCGGAAA ACAACACTGC
AGCCAAATGC GCTCATGCGC CGAAGCCAAG TACTACCAAA GAAACTGCCC CGGCACCAAA
ATGGATGGCG ATAGCGACGG CATCCCATGT GAAAGACAGC ACTGCGGGCA TTAA
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| Protein sequence | MERGTLVRWN DEKGFGFIKP EAGNGKDVFI HISALKHMAR KPMVGDAIQY LTEQQADGKV
KAIKASIEGV AVVASTSKRS APTSHHRSSH NSYSHTSNSH NSKSHNRHSR QSKSSSVMLI
PLVVILALGI FGFKRYEALT AQSNTPVKVT NELSQQPATE QIKWTQPKET FRCEAGKQHC
SQMRSCAEAK YYQRNCPGTK MDGDSDGIPC ERQHCGH
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