| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0579 |
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| Symbol | |
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| ID | 5610182 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 705321 |
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| End bp | 706250 |
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| Gene Length | 930 bp |
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| Protein Length | 309 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640931424 |
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| Product | putative LysR-like regular protein |
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| Protein accession | YP_001472319 |
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| Protein GI | 157373719 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.408916 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.164447 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAACG AGATAAACTG GAAGAGTACC GATCTGAATT TACTAGTCAC CTTTTCCTAT
CTGTACCGTT ATCGCAGTGT GAGCATCGCC GCAGATAAGA GTCATGTCAG TCAATCCGCA
ATGAGCCATA GTCTCGCCCG TTTACGCATA TTATTTGATG ACCAACTATT CGAGCGTAAG
GGACATCACA TGGAGCCCAG TGAGTACGCC CACCATATTG CCCCGATAGT GGGGCAGTTG
TTAGATGACA TATCACATCG ATTATTGGCC AAAGAGCAAT TTACACCGCT AAGCTACTCG
GGAGAATGCC GTATTGGTTT AACCGATTAT GCCGAGTTTA TTTTTGCGCC TTCACTATAT
GACGCCATAC AGGCAAGCGC GCCAAAATCT CAAGTGAGCT TTATCAATGT CAACCGGCAT
AACTATGTCA ATATTGCAGA TCAAGATAAA TTAGATGTGG TGATTGGAAG TATGCCTCAG
CCGCATTCAG ACTTTGACAG TAAATTTTTG TATACCGAAA AGCATGTTTG CTTATGTGAC
AGTCAACTGT TTTCCAATAA CCAAACTCTC ACAGTTGCAG AATTTGCCGC CGTTGAACAA
GCATTAGTCA GCCCAGATGG AACCTTAGTG ACGCAAGTGG ATAAGAGGCT GGCGGATTTA
GGGCTAACAA GAAAAGTGTC TGTCGCGTCA CGCAACTTTC TGACGATTCG AAGCCTACTG
AAAAAAAGAA AATTAATCGC AATAGTGCCG GAATTGATGG CAAAAGCACA GGGCTTCGAT
GACCAGCTCA CGGCGCTGAC TCCCCCCGTA GACATAGCCG ATTTTGAAAT TTCCTTGCTG
TGGAAAAGCA AGCTAACCAA CAATGATAAA AACTCCTGGC TACGTTCTGT GGTGCAAAAC
GTTTTGTCCA ATGCTAAATC TCAATCATAG
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| Protein sequence | MTNEINWKST DLNLLVTFSY LYRYRSVSIA ADKSHVSQSA MSHSLARLRI LFDDQLFERK
GHHMEPSEYA HHIAPIVGQL LDDISHRLLA KEQFTPLSYS GECRIGLTDY AEFIFAPSLY
DAIQASAPKS QVSFINVNRH NYVNIADQDK LDVVIGSMPQ PHSDFDSKFL YTEKHVCLCD
SQLFSNNQTL TVAEFAAVEQ ALVSPDGTLV TQVDKRLADL GLTRKVSVAS RNFLTIRSLL
KKRKLIAIVP ELMAKAQGFD DQLTALTPPV DIADFEISLL WKSKLTNNDK NSWLRSVVQN
VLSNAKSQS
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