| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0520 |
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| Symbol | |
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| ID | 5613751 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 636590 |
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| End bp | 637555 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 640931366 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001472261 |
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| Protein GI | 157373661 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAGTA TTTCCTTTAG TAACCTGGAT TTGTTAAGTA TAAATATTCT TGTCAATCTT
TATGAAAAGA AGTCTGTCAC AAAGGTTTCT ATCAAACTAA ATATTTCTGC CCCTAAGGTG
AGTCGATGCC TTAAACATAC TAGAGAGGTG TTAGGTAACG AGCTTTTTAT TAGGAAGAAG
CATGGGTTAA TCCCCAATGA ATTTGCTGAT AAGGTTTACC CTGTAGCAAA GAAAATATTA
GTATGCTGCT CAGAACTGCA AAAAATCAAC TGCGGAGTAA CAAATGATGA TCTTTGTCAC
TTTGAGATTT CCGCTCCAGA CATTATCTCA TTTCCCTTTC CAAAGTTGCT CTTGTCTATG
ATTCATAGTG AAAAGGAAAA TATAAGCTTC AATATTTCTC AATGGGGACG CTCTTCTATA
GATGACGTAA TATCCGGAAA AACAGACTTT GGGATATGCA GTAGTGATAG TGATGATGTG
GTTGGTTCTT CTGACAAAAA CTTGATATCG ATACCACTTG CTAAACTTGA CTCACTATAC
TTGATTTGTG ACCATAATCA TCCATTGTTA AAGAAAAATA TCAATCTTAA TTCAATTGCA
AACTATCCAT ACGTTGATTG TAATATTGGC TCTATAGTCC AGAGTCGGAG CCAATTTCAG
GAATACTGTA AACAAAATAC TATGCAGTTA GATGTGGAGG TTGAAGTGTG TGGGGCATAT
AGCTTATTTG ATTGCTTGCG TGAAAGAAAT GCCGTAACAC TACTGCCATT TAGTTCTATT
TATAATGTAA TTAATAGCAT GCCAGATTTT CATGCTTGCA GACTATCGAA AGTAGAGGTA
GAGCATTTTT ATACTAACTT AAGCATTCCA ACACTGTACC TCGTTTATAA TAGAAATAAT
CAAAAACCAA ATCTACCATG GTTAGTAGAT GCCATTAAAT CTTTAGTAAG TTCCACTTTG
AATTAA
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| Protein sequence | MNSISFSNLD LLSINILVNL YEKKSVTKVS IKLNISAPKV SRCLKHTREV LGNELFIRKK
HGLIPNEFAD KVYPVAKKIL VCCSELQKIN CGVTNDDLCH FEISAPDIIS FPFPKLLLSM
IHSEKENISF NISQWGRSSI DDVISGKTDF GICSSDSDDV VGSSDKNLIS IPLAKLDSLY
LICDHNHPLL KKNINLNSIA NYPYVDCNIG SIVQSRSQFQ EYCKQNTMQL DVEVEVCGAY
SLFDCLRERN AVTLLPFSSI YNVINSMPDF HACRLSKVEV EHFYTNLSIP TLYLVYNRNN
QKPNLPWLVD AIKSLVSSTL N
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