| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0512 |
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| Symbol | |
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| ID | 5611642 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 629048 |
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| End bp | 629992 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 640931358 |
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| Product | transcriptional regulator-like protein |
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| Protein accession | YP_001472253 |
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| Protein GI | 157373653 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAA TTGATCATCT TGATTCCTTC ACATTATCCG TATTTGTAGA GCTTTATGAA
CAAAAGAGTG GAACCGCTGC AGCCGCAAAA TTAGCGATAA CTCAGTCAAA AGTAAGCCGA
ACGTTGACGT CCCTTCGTCA TATTTTTGAA AATGAACTGT TTATTAGACA GCAGCATGGC
ATGAAACCAA ACCATCTGGC AGACCGACTC TACCCTCTGG CCAAAACGTT AGTCGCGAAC
TACCAGTCTC TGGCTCATAC CATGGAGATC ACCGTAGCAG AAAACAAGGC GGTTAATATT
GCTGCTCAGG GGAATTTTCA CAACATAATT TTTGACTGCT TGAATCAAGT TACTATCGGT
GAGGGGAGCC CGTTTTCTTT CGAACTACAC ACAATTACAT CAGACTTTCA GAAAAAATTG
GTTAACGGTG TTTTTGATTA TTGTATATCC ATCAACCCTG CCCAAGCGGA CGGCATCACC
CGGTATGAAA TAGGAGAAAT AGGCCGCTAT TTCTTGGTCG CAAAGAAAGG GCACCCTATC
TTCAATTCTA AAATCACATT AGAGAACATA CTCAAATATA AAGTAGCCAT ATCAAATTAT
GCTTTAGACG AGCAGAAAAT GCCCCGTATC GATAAGATTG CCTACCAGAA AAAACTCCCA
ATCACCGTTG CACTAAAAAT TTCTGACTTG AAACTGCTGC TCGATTATCT TGAGCTTGGT
GACTGTGTAG GATTGGTGGC AGGATCGGTT TTCCTTCATA CGCTGCAAGA AAGACCGGAG
CTTGAGTTCC TCGACATTAC TGAATTATCA ACTAACTTGT TTAGTGAGAC ATCCACCTAC
AAAGAACTTA AATATTATTT ACAGGCAAAT GACTCTAGTG ATCATATTTT AGCATTAAAG
TTAGCTGAGA AGTTACGGGA GCATTTTTCT TATGATAACC AGTGA
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| Protein sequence | MKKIDHLDSF TLSVFVELYE QKSGTAAAAK LAITQSKVSR TLTSLRHIFE NELFIRQQHG
MKPNHLADRL YPLAKTLVAN YQSLAHTMEI TVAENKAVNI AAQGNFHNII FDCLNQVTIG
EGSPFSFELH TITSDFQKKL VNGVFDYCIS INPAQADGIT RYEIGEIGRY FLVAKKGHPI
FNSKITLENI LKYKVAISNY ALDEQKMPRI DKIAYQKKLP ITVALKISDL KLLLDYLELG
DCVGLVAGSV FLHTLQERPE LEFLDITELS TNLFSETSTY KELKYYLQAN DSSDHILALK
LAEKLREHFS YDNQ
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