| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0492 |
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| Symbol | |
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| ID | 5613844 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 605844 |
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| End bp | 607127 |
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| Gene Length | 1284 bp |
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| Protein Length | 427 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931337 |
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| Product | transcriptional regulator, CadC |
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| Protein accession | YP_001472233 |
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| Protein GI | 157373633 |
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| COG category | [K] Transcription |
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| COG ID | [COG3710] DNA-binding winged-HTH domains |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTAAAAA TCACTCCTTA TCTGGAGTTA GATACAGAAG CCAATCATTT AGTTGATCAC
GTCAATGGCA AGAATATCAG CCTGACTTTC TCTGAGTCAG CGGTACTGAA CTGCTTGCTG
CTCTCTTCCA ACTCCGTCTG CTCTAAAGAT GAGTTACTCG GTGCTGGTTG GCCCGATCGT
GTCGTTGCTA CAACATCGTT AACTCAGTGT ATCAGTACGC TGCGTAAGAA ACTCGACCCC
TATAGAGAGG TGCAACTAAA AACTGTTGCG CGTCGTGGTT ATCAGCTGCA TATAGCGACA
CAATCCCATG TGAAAATGTT GGCCGTGAAT GATGCCGAGT CTATGCGAGC CGCTATTGTC
GATGTCTCAC TGGTGGTAAA AGTTTCGGGC ATCCTGCTTG CGTTATTTTT GGTGCTACTT
GTCTGGTATT TTAGTGATTA TCACAAGGTA AGTCAGAAAT TGTCTCTTTG GAGCGCCGAT
AAACGGGTTG AGCTCAAAAT TGGTGGGATC ACCGGAGATG CGCGACTGCT TTATAAAGAT
GATGCTCCCC ACTTACATCC ATCCATGTGG GAAAAGCATC TCGATTCTGA TGGTGATTAC
CTCGCCTCCT ACCCAGGCTT CAATGCTTTT GTGGCGACCG ATGGTACAAA TTACTCAATG
GCCATCTGTC CGGACAGTGA TAAAGAGCAG TGCTCCGGAA ATGGATTGAT CAATATCACC
TCCGTCGACT CTGAGCCAGC CGGTTTAAAT ATGAAAGATT TTGCCGAGTT GTCGAAAAAG
ATGGAGCAGA GAATACGCTA TAACCGCATC ATGCTGCCTG AGGGTGAAGA GGGCGTCGGA
GCCCTGATCG AGCACCACTA TCACGCCGAT GTCTACTTTC CTGTGAAAGG GGAGCTGCTG
ATCAGGTCTG ATATCAGCAT GTCTCTTATC TATGATTCGG ACACTACGGG TGAATTTCAC
TCCTCGACCT GTATTACCGA CGAAGATTGT CTGACCACAC CGATAAAGTA CAAGATTAGG
GGCAAGTTTA AGCAATACAG CGAGACAATT GATAATCTGA AAATTGATGC TTTTCAGGTG
AGCGTACAGC AGAAAGATCT GATTAAACCC GAGCGACTCA ATGCTTCGGC GGTTCCCTTC
TATCGAGATC TGAGAAAGCG TGATATTAAG GACGAAGAAC TCTACTTTTT CCGCATATAT
CAGGATGATA AGACCGCGGT ATGGATAACA CCCCTCTTTG GTCAGGTTAC GGCCTGGTAC
AAATATGACC AGGTAGATAT CTGA
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| Protein sequence | MLKITPYLEL DTEANHLVDH VNGKNISLTF SESAVLNCLL LSSNSVCSKD ELLGAGWPDR
VVATTSLTQC ISTLRKKLDP YREVQLKTVA RRGYQLHIAT QSHVKMLAVN DAESMRAAIV
DVSLVVKVSG ILLALFLVLL VWYFSDYHKV SQKLSLWSAD KRVELKIGGI TGDARLLYKD
DAPHLHPSMW EKHLDSDGDY LASYPGFNAF VATDGTNYSM AICPDSDKEQ CSGNGLINIT
SVDSEPAGLN MKDFAELSKK MEQRIRYNRI MLPEGEEGVG ALIEHHYHAD VYFPVKGELL
IRSDISMSLI YDSDTTGEFH SSTCITDEDC LTTPIKYKIR GKFKQYSETI DNLKIDAFQV
SVQQKDLIKP ERLNASAVPF YRDLRKRDIK DEELYFFRIY QDDKTAVWIT PLFGQVTAWY
KYDQVDI
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