| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0445 |
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| Symbol | zntR |
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| ID | 5612543 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 555335 |
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| End bp | 555814 |
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| Gene Length | 480 bp |
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| Protein Length | 159 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640931290 |
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| Product | zinc-responsive transcriptional regulator |
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| Protein accession | YP_001472186 |
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| Protein GI | 157373586 |
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| COG category | [K] Transcription |
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| COG ID | [COG0789] Predicted transcriptional regulators |
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| TIGRFAM ID | [TIGR02043] Zn(II)-responsive transcriptional regulator |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.261357 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTATCGAA TTGGCGAGCT GGCTAAGCTA TGTGAAGTGA AGGCCGACAC ATTACGATTT
TATGAAAAAC ATGGCCTATT GGCGCCTTCC TCACGCAGTG ACTCGGGTTA CCGTTTATAT
AGTGAGAGTG ATGCGGAGCG ATTGCGTTTT ATATTAAGAG CTAAGGCGGT CGGCTTTACC
TTAGCCGAGA TCACCGAGCT TCTCTCTATC GAGTTAGACA AATCCAACTG GGCATGCGCC
GATGTTAAAG GCTTGGTGGA TAGCAAGTTG GCTCAAGTGA ATGAAAAAAT ATCCGAGCTA
AATCACTTTC AAGTGTCACT TCAGCGTCTG TCGGATGCCT GTTGTGGAGG ACCGGAGAGT
GCCGAGCATT GCTCTATCTT AGAAGCGTTA GAAACGAATA CCGATAACAT TAAGTGTGAA
AATCACGCTC ATCATCATGA TAAATCACAG TATACAAAAA ATTGTCAAAG TAAGGGTTAG
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| Protein sequence | MYRIGELAKL CEVKADTLRF YEKHGLLAPS SRSDSGYRLY SESDAERLRF ILRAKAVGFT
LAEITELLSI ELDKSNWACA DVKGLVDSKL AQVNEKISEL NHFQVSLQRL SDACCGGPES
AEHCSILEAL ETNTDNIKCE NHAHHHDKSQ YTKNCQSKG
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