| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0418 |
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| Symbol | |
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| ID | 5611030 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 488005 |
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| End bp | 490728 |
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| Gene Length | 2724 bp |
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| Protein Length | 907 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931250 |
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| Product | preprotein translocase subunit SecA |
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| Protein accession | YP_001472159 |
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| Protein GI | 157373559 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0653] Preprotein translocase subunit SecA (ATPase, RNA helicase) |
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| TIGRFAM ID | [TIGR00963] preprotein translocase, SecA subunit
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000808939 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000270752 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTTGGTA AAATACTGAC AAAATTATTT GGTAGTCGTA ACGATCGCAC ACTTAAATCT
CTTGGCAAAA CTGTCACAAA GATTAATGCA CTTGAAGATG AATATGAAAA GCTGACTGAC
GAAGAGTTAA AGGCTAAGAC TACTGCCTTT CGTGGTCGTT TAGAGTCTGG TGAGACTTTA
GATGATGTGA TGTCTGAAGC TTTTGCCGTT GTACGCGAAG CGTCTAAGCG TGTTTTTGAA
ATGCGTCATT TCGATGTTCA AATGCTGGGT GGTATGGTAC TGGATAGTAA CCGTATCGCT
GAGATGAGAA CGGGTGAAGG TAAAACACTT ACCGCAACAC TACCGGCTTA TCTGAATGGT
TTGACGGGTA AAGGTGTTCA CGTTATTACG GTCAATGACT ATTTGGCACG TCGTGATGCT
GAGAACAACC GTCCGCTTTT TGAGTTTCTT GGGCTCTCTG TTGGTATTAA TGTCGCGGGT
CTTGGCCAGC AAGAGAAGAA AGCTGCCTAC GATGCCGATA TTACTTATGG TACTAACAAC
GAATTTGGTT TCGATTATCT TCGTGACAAC ATGGCCTTTT CGCCACAAGA GCGTGTTCAA
CGCCCACTTC ACTATGCACT GATCGATGAA GTCGATTCGA TTCTTATCGA TGAAGCAAGA
ACGCCATTGA TCATCTCAGG TGCCGCAGAA GACAGCTCTG AGCTCTATAC CAAAATTAAT
ACCCTTATTC CGCATCTTGT CCGTCAAGAC AAAGAAGATA CGGAAGAGGA GATCGGCGAT
GGTGATTACT CTATCGACGA GAAGGCTAAA CAAGTTCACA TGACTGAACG TGGACAAGAG
AAAGTTGAAG TGCTGCTTAC CGAACGCGGA ATGTTGGCCG AAGGTGACTC TCTATATTCA
GCTGCAAATA TCTCTCTATT GCATCATGTT AATGCCGCGC TGCGTGCTCA TACTCTTTTC
GAAAAAGATG TTGACTATAT CGTCCAGGAT AACGAAGTTA TCATTGTCGA TGAGCATACC
GGTCGTACTA TGCCGGGTCG CCGTTGGTCT GAAGGTCTTC ATCAAGCGGT AGAAGCGAAA
GAAGGCGTTC ATATTCAAAA TGAAAACCAA ACTCTTGCAT CTATTACTTT CCAGAACTTC
TTCCGCCAAT ATGAGAAGTT AGCGGGAATG ACAGGTACAG CCGATACTGA AGCGTTCGAA
TTCCAACACA TCTATGGATT AGATACGGTA GTTATTCCAA CCAACAGACC TATGGTTCGT
AAAGACCATG CCGATCTCGT GTATTTAACT CCTGATGAGA AATACGCTGC GATTATTGAA
GATATTCGGG GCTGTCGTGA ACGTGGTCAG CCAGTGCTTG TGGGTACCGT TTCAATTGAG
CAATCGGAAC TGCTTGCACG ATTAATGAAG CAAGAGAAGA TCCCTCACGA AGTATTGAAC
GCAAAATTCC ATGAACGTGA AGCCGATATC GTTGCCCAAG CGGGTCGAAC CGGTGCGGTA
ACCATTGCCA CCAACATGGC GGGTCGTGGT ACCGATATCG TACTCGGTGG TAACTGGGCG
ATGGAGATCG AGGTTCTTAC TAACCCAACT GATGAACAGA AAGCCAAGAT TAAAACAGAC
TGGCAGGTTC GCCATGACGA AGTCGTTGCT GCTGGTGGAT TGCATATCCT GGGTACAGAG
CGTCATGAGT CTCGCCGTAT CGATAACCAG TTACGTGGTC GTTCTGGTCG TCAAGGTGAT
GCCGGCTCTT CACGCTTCTA CCTTTCAATG GAAGATAGCC TGATGCGTAT CTTTGCTTCA
GACCGTGTCT CTTCAATGAT GAAGAAGTTA GGTATGGAGA AAGGTGAGGC GATAGAGCAC
CCTTGGGTTT CTCGAGCTAT TGAAAACGCA CAACGTAAAG TTGAAGCGCG TAACTTCGAT
ATTCGTAAGC AGTTACTTGA GTTTGATGAT GTAGCCAACG ATCAGCGTCA AGTTGTCTAT
GCACAGCGAA ATGAACTGAT GGATGCTGAG AGTATCCAGG ACACTATCGT TAATATTCAG
GCCGATGTGG TTAATGGTCT CGTCGATCAA TATATTCCTC AGCAATCTGT TGAGGAACTA
TGGGATGTAC CTGGCTTACA AACACGTCTG GAGCAAGAGT ACGGGTTGAA AATGCCAGTG
CAGGAGTGGC TGGATAAAGA AGATGATCTT CATGAAGAAA CGCTTCGTGA GCGAATTGTC
GATACTTGGG TGAAATCATA CCAAGCTAAA GAAGAGATGG TTGGCGAGCA AGTTCTACGT
CAATTTGAAA AAGCTGTCAT GCTACAAACA CTCGACGGTT TGTGGAAAGA GCATTTGGCT
GCCATGGATC ATCTGCGTCA AGGCATTCAT CTTCGTGGCT ATGCACAGAA GAACCCAAAG
CAGGAATACA AGCGTGAATC GTTTGAGCTG TTCCAGCAGA TGTTAGAAAC ACTGAAACAC
GATGTCATCA GTGTTCTATC TAAGGTTCAA GTACAAGCTC AGTCAGATGT AGAAGAGATG
GAAGAACGCC GCCGCCAGGA AGATGCCAAA ATCCAACGTG ATTACCAACA TGCTTCAGCA
GAAGCTATAG TCGGAGCTGA GGAAGCTGAA TCTTTGTCTG CACACACTCC GGTTGTGCGG
GAAGGTGAAA AGGTTGGCCG TAATGATCCT TGTCCATGTG GTTCAGGGCG TAAGTATAAG
CAGTGTCACG GCAAGCTGAC ATAA
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| Protein sequence | MFGKILTKLF GSRNDRTLKS LGKTVTKINA LEDEYEKLTD EELKAKTTAF RGRLESGETL
DDVMSEAFAV VREASKRVFE MRHFDVQMLG GMVLDSNRIA EMRTGEGKTL TATLPAYLNG
LTGKGVHVIT VNDYLARRDA ENNRPLFEFL GLSVGINVAG LGQQEKKAAY DADITYGTNN
EFGFDYLRDN MAFSPQERVQ RPLHYALIDE VDSILIDEAR TPLIISGAAE DSSELYTKIN
TLIPHLVRQD KEDTEEEIGD GDYSIDEKAK QVHMTERGQE KVEVLLTERG MLAEGDSLYS
AANISLLHHV NAALRAHTLF EKDVDYIVQD NEVIIVDEHT GRTMPGRRWS EGLHQAVEAK
EGVHIQNENQ TLASITFQNF FRQYEKLAGM TGTADTEAFE FQHIYGLDTV VIPTNRPMVR
KDHADLVYLT PDEKYAAIIE DIRGCRERGQ PVLVGTVSIE QSELLARLMK QEKIPHEVLN
AKFHEREADI VAQAGRTGAV TIATNMAGRG TDIVLGGNWA MEIEVLTNPT DEQKAKIKTD
WQVRHDEVVA AGGLHILGTE RHESRRIDNQ LRGRSGRQGD AGSSRFYLSM EDSLMRIFAS
DRVSSMMKKL GMEKGEAIEH PWVSRAIENA QRKVEARNFD IRKQLLEFDD VANDQRQVVY
AQRNELMDAE SIQDTIVNIQ ADVVNGLVDQ YIPQQSVEEL WDVPGLQTRL EQEYGLKMPV
QEWLDKEDDL HEETLRERIV DTWVKSYQAK EEMVGEQVLR QFEKAVMLQT LDGLWKEHLA
AMDHLRQGIH LRGYAQKNPK QEYKRESFEL FQQMLETLKH DVISVLSKVQ VQAQSDVEEM
EERRRQEDAK IQRDYQHASA EAIVGAEEAE SLSAHTPVVR EGEKVGRNDP CPCGSGRKYK
QCHGKLT
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